DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34120 and snu

DIOPT Version :9

Sequence 1:NP_001285513.1 Gene:CG34120 / 318066 FlyBaseID:FBgn0083956 Length:1998 Species:Drosophila melanogaster
Sequence 2:NP_651628.1 Gene:snu / 43391 FlyBaseID:FBgn0039594 Length:808 Species:Drosophila melanogaster


Alignment Length:823 Identity:175/823 - (21%)
Similarity:301/823 - (36%) Gaps:246/823 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   859 SLVNVSKLYGSK----CAVSNLSLDFARNQVSCLLGRNGAGKSTLIKLLTGQIRQSSGKVLLAG- 918
            |:.:..|.||.|    ..::||::...:..:..|||.:|.||:||:..:.|:....:|::.:.| 
  Fly    75 SVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGG 139

  Fly   919 ----------EHQVGVCWQDNILIPTLTAREHLQLYAQIKIPPGGSGGVEEIRSEVAQTLQ-SLN 972
                      ..:||...|:..|....:.:|.:..:       |...|::  ..|:.:.|| .||
  Fly   140 KPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYF-------GWIFGMD--TKEILERLQFLLN 195

  Fly   973 FGKHESYPSWQ-----LSGGYRRRLCVAIAFIASPSVVILDEPCNGVDAKARKDIW-QLIERLRQ 1031
            |   ...||.:     ||||.:||:..|:|.:..|.::|||||..|||...|:.|| .|:...:.
  Fly   196 F---LDLPSEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKA 257

  Fly  1032 G-RAVIFATHFMDEAKYLSDSLVIMRNGRIIAQHSRDSLQRLCTSNYSIRLRCADATGVTFVIQK 1095
            | :.||..||:::||:. :.::.:||:|.::|:.|...|..:        .:|.....|...:.:
  Fly   258 GQKTVIITTHYIEEARQ-AHTIGLMRSGHLLAEESPSVLLSI--------YKCISLEEVFLKLSR 313

  Fly  1096 AQQLLPQTQVTHSGAADYPHSLTINA-SYAEHL------TPGAVEFLELLQSQVTAGSISDVELT 1153
            .|.  .:..|||   .::.::::::| ::...:      ..|.|..|...||:....:.|:..:.
  Fly   314 IQS--QKGDVTH---VNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNGSIY 373

  Fly  1154 TSSSLEQEFEQLNRNGEDAGPRRPASDRSGVVAGPAMITDEPPTACK-----QFRLLMGKRLRHL 1213
            |            .|.|...|  |.|.|:..........|.....||     :.|.|:.|.:..:
  Fly   374 T------------LNQEPYSP--PPSRRNNNPNDEESCQDCYSNLCKITSKGKIRALLTKNMLRM 424

  Fly  1214 SRNYRLLLYVLLLPAL--FELCAMWFVSYRLEDDFDTVLPLSRSLYPQTAQFLSHERATSFSEKL 1276
            .||..::|::..||.:  ...|                |.:.|.........::.|...:..|..
  Fly   425 WRNVGVMLFIFALPVMQVILFC----------------LAIGRDPQGLNLAIVNGEMNDTVRENC 473

  Fly  1277 YPQLRTSCDHLGECRV---FNTS-QQSYDWVLN----------SWGE--YSERRYGGYGLNGSGA 1325
            |.:......:|| ||.   .||| .::|...|:          :||.  .||        |.:.|
  Fly   474 YWEDGCHFKNLG-CRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAVYISE--------NFTDA 529

  Fly  1326 TVWYNNKGYHS---------MMAWLNDLNSELLRTTMNDSESSILTLNEPWKLGFAELSTSSILR 1381
            .:...|.|..|         :..||:          |::.:..:: ||...:|.|.:.: ..:|.
  Fly   530 FIARANLGRDSDDETIDSSEVKVWLD----------MSNQQIGVM-LNRDIQLAFRDFA-MGLLG 582

  Fly  1382 QAGD----------------GSM----------VFILLIAFGLVVASGSVYLVNERVNGEKLQQR 1420
            |.|.                |:|          ..||.|.|.|.||..|..|:.||..|      
  Fly   583 QCGSNPKLGDVPIQFRDPIYGTMNPSFTDFVAPGVILTIVFFLAVALTSSALIIERTEG------ 641

  Fly  1421 LCGVSAVTYWLVALVWDYLVMVLGLIVCLVVILMFGMPVFVDRQQLVGIIGLSLAFSFACVPSVH 1485
                                                   .:||..:.|:....:.||       |
  Fly   642 ---------------------------------------LLDRSWVAGVSPFEILFS-------H 660

  Fly  1486 VAEKIFSDSSIAIVSIFCANLIVPLVTMGIILILGVVGDGPAWDDWRHALNQAFLIFPIHALGDG 1550
            |         |....:.|....:.|:.|  :::.||..:|..:  |...|          .|..|
  Fly   661 V---------ITQFVVMCGQTTLVLIFM--LVVFGVTNNGDLF--WVIVL----------TLLQG 702

  Fly  1551 FLELCKNYMVALVFRRYDIDSYKHPLASDLLGRHFTALLLVGV 1593
            ...:|..::::.|   .:::.....||   ||..:..|||.||
  Fly   703 MCGMCFGFLISSV---CELERNAIQLA---LGSFYPTLLLSGV 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34120NP_001285513.1 ABC2_membrane_3 <621..760 CDD:289468
ABC_subfamily_A 859..1073 CDD:213230 67/236 (28%)
drrA 865..1162 CDD:130256 80/326 (25%)
ABC2_membrane_3 1230..1601 CDD:289468 77/415 (19%)
Mem_trans 1436..>1552 CDD:304621 18/115 (16%)
ABC_subfamily_A 1651..1857 CDD:213230
drrA 1666..1945 CDD:130256
snuNP_651628.1 LolD 73..290 CDD:224059 65/227 (29%)
ABC_DR_subfamily_A 74..286 CDD:213197 64/223 (29%)
pip_yhgE_Nterm 427..>474 CDD:276270 9/62 (15%)
ABC2_membrane_3 429..801 CDD:289468 80/429 (19%)
ABC2_membrane 601..769 CDD:279410 43/220 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46598
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.810

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