Protein Alignment ldd and snu

DIOPT Version :10

• Sequence 1: NP_001285513.1
• Gene: ldd / 318066
• FlyBaseID: FBgn0083956
• Length: 1998
• Species: Drosophila melanogaster
• Sequence 2: NP_651628.1
• Gene: snu / 43391
• FlyBaseID: FBgn0039594
• Length: 808
• Species: Drosophila melanogaster
• Alignment Length: 762
• Identity: 174/762 - (22%)
• Similarity: 300/762 - (39%)
• Gaps: 189/762 - (24%)

  Fly   859 SLVNVSKLYGSK----CAVSNLSLDFARNQVSCLLGRNGAGKSTLIKLLTGQIRQSSGKVLLAG- 918
            |:.:..|.||.|    ..::||::...:..:..|||.:|.||:||:..:.|:....:|::.:.|
  Fly    75 SVRHAFKAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMDAGEIFVLGG 139

  Fly   919 ----------EHQVGVCWQDNILIPTLTAREHLQLYAQIKIPPGGSGGVEEIRSEVAQTLQ-SLN 972
                      ..:||...|:..|....:.:|.:..:       |...|::  ..|:.:.|| .||
  Fly   140 KPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYF-------GWIFGMD--TKEILERLQFLLN 195

  Fly   973 FGKHESYPSWQ-----LSGGYRRRLCVAIAFIASPSVVILDEPCNGVDAKARKDIW-QLIERLRQ 1031
            |   ...||.:     ||||.:||:..|:|.:..|.::|||||..|||...|:.|| .|:...:.
  Fly   196 F---LDLPSEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKA 257

  Fly  1032 G-RAVIFATHFMDEAKYLSDSLVIMRNGRIIAQHSRDSLQRLCTSNYSIRLRCADATGVTFVIQK 1095
            | :.||..||:::||:. :.::.:||:|.::|:.|...|..:        .:|.....|...:.:
  Fly   258 GQKTVIITTHYIEEARQ-AHTIGLMRSGHLLAEESPSVLLSI--------YKCISLEEVFLKLSR 313

  Fly  1096 AQQLLPQTQVTHSGAADYPHSLTINA-SYAEHL------TPGAVEFLELLQSQVTAGSISDVELT 1153
            .|.  .:..|||   .::.::::::| ::...:      ..|.|..|...||:....:.|:..:.
  Fly   314 IQS--QKGDVTH---VNFSNNISLHAMAFGSKMDKPSSSQEGGVVGLNFHQSKEVLINDSNGSIY 373

  Fly  1154 TSSSLEQEFEQLNRNGEDAGPRRPASDRSGVVAGPAMITDEPPTACK-----QFRLLMGKRLRHL 1213
            |            .|.|...|  |.|.|:..........|.....||     :.|.|:.|.:..:
  Fly   374 T------------LNQEPYSP--PPSRRNNNPNDEESCQDCYSNLCKITSKGKIRALLTKNMLRM 424

  Fly  1214 SRNYRLLLYVLLLPAL--FELCAMWFVSYRLEDDFDTVLPLSRSLYPQTAQFLSHERATSFSEKL 1276
            .||..::|::..||.:  ...|                |.:.|.........::.|...:..|..
  Fly   425 WRNVGVMLFIFALPVMQVILFC----------------LAIGRDPQGLNLAIVNGEMNDTVRENC 473

  Fly  1277 YPQLRTSCDHLGECRV---FNTS-QQSYDWVLN----------SWGE--YSERRYGGYGLNGSGA 1325
            |.:......:|| ||.   .||| .::|...|:          :||.  .||        |.:.|
  Fly   474 YWEDGCHFKNLG-CRYLSHLNTSVVKTYYEDLDDAKEAVRKGTAWGAVYISE--------NFTDA 529

  Fly  1326 TVWYNNKGYHS---------MMAWLNDLNSELLRTTMNDSESSILTLNEPWKLGFAELSTSSILR 1381
            .:...|.|..|         :..||:          |::.:..:: ||...:|.|.:.: ..:|.
  Fly   530 FIARANLGRDSDDETIDSSEVKVWLD----------MSNQQIGVM-LNRDIQLAFRDFA-MGLLG 582

  Fly  1382 QAGD----------------GSM----------VFILLIAFGLVVASGSVYLVNERVNGEKLQQR 1420
            |.|.                |:|          ..||.|.|.|.||..|..|:.||..|...:..
  Fly   583 QCGSNPKLGDVPIQFRDPIYGTMNPSFTDFVAPGVILTIVFFLAVALTSSALIIERTEGLLDRSW 647

  Fly  1421 LCGVSAVTYWLVALVWDYLVM----VLGLIVCLVVILMFGMPVFVDRQQLVGIIGLSL------- 1474
            :.|||........::..::||    .|.||..|||   ||:   .:...|..:|.|:|
  Fly   648 VAGVSPFEILFSHVITQFVVMCGQTTLVLIFMLVV---FGV---TNNGDLFWVIVLTLLQGMCGM 706

  Fly  1475 AFSFACVPSVHVAEKIFSDSSIAIVSIF----CANLIVPLVTMGIIL 1517
            .|.| .:.||...|:  :...:|:.|.:    .:.:|.|:..|.::|
  Fly   707 CFGF-LISSVCELER--NAIQLALGSFYPTLLLSGVIWPIEGMPVVL 750

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ldd	NP_001285513.1	rim_protein	179..1867	CDD:130324	174/762 (23%)
snu	NP_651628.1	CcmA	74..311	CDD:440746	69/256 (27%)
		YadH	609..807	CDD:440604	40/151 (26%)