DRSC/TRiP Functional Genomics Resources

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Protein Alignment ldd and Abca3

DIOPT Version :10

Sequence 1:NP_001285513.1 Gene:ldd / 318066 FlyBaseID:FBgn0083956 Length:1998 Species:Drosophila melanogaster
Sequence 2:NP_608445.2 Gene:Abca3 / 33103 FlyBaseID:FBgn0031170 Length:1714 Species:Drosophila melanogaster


Alignment Length:1685 Identity:383/1685 - (22%)
Similarity:701/1685 - (41%) Gaps:355/1685 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   513 LEESGDEKAAPKV--SASASDHEATTISPSSLDGVTTEEVRVT-TEQTVVSGD------------ 562
            :||:.......|:  |.:|:..|..|:|.::..||..::.... ||...:..|            
  Fly   118 VEEAWQSLGKNKICESENATQLELDTVSKNAFAGVQFDDAWANLTENDPLPNDFHFALRFPAELR 182

  Fly   563 ----------------P--DLLLLKNE-----DVLKRSKRQGLFDLLGGFGGSGDANKKNKFEVD 604
                            |  ||...:||     .:.....|:|...|......:....|..:.::.
  Fly   183 TATIAIANTWLTMRLFPTIDLTGPRNEGDDDGGIPPGYLREGFLPLQHSLSMAYLRQKSGEQDLP 247

  Fly   605 NMQFYTKQFPYPAFLNDVFKRGLYLAQGVQVAYLLGLVVFVALSVRERIWM-RESRNSMLMRSMG 668
            |:  ..|::|:||::.|....|:   ..:....:|...::....:.:.|.. :|.:...:|:.||
  Fly   248 NV--VMKRYPFPAYIFDPLLEGM---SSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMG 307

  Fly   669 LKAHSELVAWALMSFLEL---CVIFALISGVLYSG--GILGYTNWFFMMFYCLSFGLCLISFCYM 728
            |.......||.:.||:.|   .::.|::..:.:|.  .:|.:.|:..::|:.:.:.:..|.||:|
  Fly   308 LSNWLHWTAWFVKSFIMLTISAILIAILVKINWSEDVAVLTHANFTALVFFLIIYIVSSICFCFM 372

  Fly   729 CTNFFNSANIGAVASALLFFISLCPFIIVLMFDAKLSVFESFLVDLSFTTAFAKGWGELIRMELQ 793
            ...||:.|:..|..:.|::||:..|:...:.....||:.......|...||...|...::..|..
  Fly   373 MATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGT 437

  Fly   794 QEGL---------TVRHLIQVGPARSECAMALLMFLLDLLLYAVIGLAYQR-------YKKTDNY 842
            .|||         :|...:.:|       ..::|.|:..::|.:|.|..::       ..:..|:
  Fly   438 GEGLQWSNFFTPVSVDDTLTLG-------AVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNF 495

  Fly   843 SFV--------------------------KVSRSQLDGK-LGASLVNVSKLYGSKCAVSNLSLDF 880
            .|.                          |...::.:|| :|..:.::.|.:|:|..|..||::.
  Fly   496 PFTREFWCGEREYTGVEDIPNGHVEQRDPKAFETEPEGKHIGLQMRHLKKRFGNKMVVKGLSMNM 560

  Fly   881 ARNQVSCLLGRNGAGKSTLIKLLTGQIRQSSGKVLLAGEH----------QVGVCWQDNILIPTL 935
            ..::::.|||.|||||:|.|.:|||....:||..::.|..          .:|:|.|.|:|...:
  Fly   561 FEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEM 625

  Fly   936 TAREHLQLYAQIKIPPGGSGGVEEIRSEVAQTLQSLNFGKHESYPSWQLSGGYRRRLCVAIAFIA 1000
            :...|::.::::|    |..| :.:..|||:.|:.:......:..|.:||||.:|:|.|..|...
  Fly   626 SVSNHIRFFSRMK----GLRG-KAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCG 685

  Fly  1001 SPSVVILDEPCNGVDAKARKDIWQLIERLRQGRAVIFATHFMDEAKYLSDSLVIMRNGRIIAQHS 1065
            ...||:.|||.:|:|..||:.:|.|:::.:.||.::..|||||||..|.|.:.||.:|.:..|.:
  Fly   686 DTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 750

  Fly  1066 RDSLQRLCTSNYSIRLRC-----ADATGVTFVIQK-AQQLLPQTQVTHSGAADYPHSLTINASYA 1124
            ...|::...|.|  ||.|     .:...||.::.| ...|.|:..:....:...|.|  .:|.:.
  Fly   751 SFFLKKQYGSGY--RLICVKRDDCETNEVTALLNKYIPGLKPECDIGAELSYQLPDS--ASAKFE 811

  Fly  1125 E------------HLTPGAVEFLELLQSQVTAGSISDVELTTSSSLEQEFEQLNR----NGEDAG 1173
            |            ||....|....:.:..:..|:..|    .:.:::.:.|.:|.    .|||..
  Fly   812 EMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKD----NTGNIKDQHEIMNGGSGFRGEDDN 872

  Fly  1174 PRRPA----SDRSGVVAGPAMITDEPPTACKQFRLLMGKRLRHLSRNYRLLLYVLLLPALFELCA 1234
            ....:    |:...::.|..::::       |::.::.|:..:..||..|||...::|..|.:..
  Fly   873 ESVQSDGIFSENRRLLQGLQLLSN-------QWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVT 930

  Fly  1235 MWFVSYRLEDDFDTVLPLSRSL--YPQTAQFLSH---ERATSF--SEKLYPQLRTSCDHLGECRV 1292
            :..:  :.:..|..:.|::.||  ||.....|..   :..|.:  :.|.....|:...:.|   :
  Fly   931 ILII--KTQGTFQELKPITISLTQYPLAVTVLDRSNVQNGTGYEIANKYEDLARSYGSNYG---L 990

  Fly  1293 FNTSQQSY-DWVLNSWGEYSERRYGGY----GLNGSGATVWYNNKGYHSMMAWLNDLNSELLRTT 1352
            ..|..|.: |::|:.......|....|    .:..|..|.|.||:..|:....:|.::: .:...
  Fly   991 ELTGTQGFEDYILDLGKTIQVRINSRYLVAATITESKITAWLNNQALHTAPLTVNMVHN-AIADK 1054

  Fly  1353 MNDSESSILTLNEPWKLGFAELSTSSILRQAGDGSMVFILL---IAFGLVVASGSVY---LVNER 1411
            :..|...|...|.|     ...:||::|.|...|:.:...|   :.|.:...| |:|   |:.||
  Fly  1055 LFGSSVKIQVTNAP-----LPYTTSTLLSQLSTGNNLGTQLASNLCFCMCFVS-SIYILFLIKER 1113

  Fly  1412 VNGEKLQQRLCGVSAVTYWLVALVWDYLVMVLGLIVCLVVILMF---GMPVFVDRQQLVGIIG-- 1471
            .:..||.|.:.||...|:||...:.|:...::..::.::.|:.|   |:..|       |.:|  
  Fly  1114 ESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTF-------GELGRY 1171

  Fly  1472 --LSLAFSFACVPSVHVAEKIFSD-----SSIAIVSIFCANLIVPLVTMGIILILGVVGDGPAWD 1529
              |.|.|.||.:|.:::....|.:     :.::||:|||.        |.:.::: ||.....:|
  Fly  1172 YLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCG--------MALFIVV-VVMSSELFD 1227

  Fly  1530 --DWRHALNQAFLIFPIHALGDGFLELCKNY-------------------MVALVFRRYDIDSY- 1572
              |....|...|.|||..:|.   :.|.|.|                   :..||.:..::..| 
  Fly  1228 TKDTADILGWIFRIFPHFSLA---MSLNKVYTNTATRNACAKAGALPPILLCELVPQCCNLKPYF 1289

  Fly  1573 --KHP--LASDLLGRHFTALLLVGVAALIINVLIEWHLLRRLWQRVERL------------LDCT 1621
              :.|  |...:.      :.:.||...:|.:::|:.|:..|..::.:|            ||..
  Fly  1290 AWEEPGVLPETVY------MAVTGVVFFLIIIVLEFRLINELMFKIRQLISKPPPPPTEGQLDDD 1348

  Fly  1622 YRRELDKLGQLKLVNIQSIFKSCVDTGEAVRAENLWLAYRRGHY----AVRNVNFSVQRGECFGL 1682
            ...|.:::.|:              :...:..:||.|.....:|    ||..|:..||..|||||
  Fly  1349 VANERERILQM--------------SSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGL 1399

  Fly  1683 LGKNGAGKSTIFKLLTG--------------QLQPDVGQIYFEQPGISYCPQSNPLDPLLTTTEC 1733
            ||.|||||:|.||::||              .|:.::..||   ..|.||||.:.|...||..|.
  Fly  1400 LGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIY---KMIGYCPQFDALLDDLTGREV 1461

  Fly  1734 IRFYGRLRGIRD--LDQFLDRVLDTYELRPYKDVQVRNLSGGNRRKLTVAVTCCGCTPTVLMDEP 1796
            :|.:..|||:::  :.|..:.:..::....:.|.|....||||:|||:.|:...|....:.:|||
  Fly  1462 LRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEP 1526

  Fly  1797 TSDMDPVTRDMVYATIEQLLLARRAVVLTSHSVSEIEHLCQRVAVLRAGQVIASDSPQRLKSE-- 1859
            |:.|||..|..::..:.::..:.:::||||||:.|.|.||.|:|::..|:.....|.|.||::  
  Fly  1527 TTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFS 1591

  Fly  1860 ---------------------HGGYYAVTCFCGPAQQAILSRSLNQRLPGARDL----------- 1892
                                 .|||..     .|.:|.:.::...:.:...::.           
  Fly  1592 KGLILKIKVRRNLEALRQARLSGGYAR-----NPDEQTVPAQMSQRDIDAVKEFVETEYPNSILQ 1651

  Fly  1893 QHYAHSLRFLVRVRSPGSLGDAPLL----SELFAIL---CDVCVNVARFSLSRCRFETVF 1945
            :.|...|.|.:           ||.    |.:|.::   .|. :||..:|:|:...|.:|
  Fly  1652 EEYQGILTFYI-----------PLTGVKWSRIFGLMESNRDQ-LNVEDYSVSQTTLEEIF 1699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lddNP_001285513.1 rim_protein 179..1867 CDD:130324 367/1587 (23%)
Abca3NP_608445.2 rim_protein <137..1708 CDD:130324 378/1666 (23%)

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