DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34120 and Abca8a

DIOPT Version :9

Sequence 1:NP_001285513.1 Gene:CG34120 / 318066 FlyBaseID:FBgn0083956 Length:1998 Species:Drosophila melanogaster
Sequence 2:XP_006533124.3 Gene:Abca8a / 217258 MGIID:2386846 Length:1653 Species:Mus musculus


Alignment Length:1544 Identity:351/1544 - (22%)
Similarity:600/1544 - (38%) Gaps:370/1544 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   641 LVVFVALSV-RERIWMRESRNSMLMRSMGLKAHSELVAWALMSFLELCV-------IFALISGVL 697
            |..:::..| |||..|:.     ||..|||:..:..::|.|:..:.:.|       |..|:..|.
Mouse   270 LTYYISAGVTRERKKMKG-----LMAVMGLRDSAFWLSWGLLYGVIVFVVTLLSTTIVKLVQFVF 329

  Fly   698 YSGGILGYTNWFFMMFYCLSFGLCLISFCYMCTNFFNSANIGAVASALL---FFISLCPFIIV-- 757
            .:|.::.::.:||       :||.|||..::             .|.||   |...|..|::.  
Mouse   330 LTGFMVIFSLFFF-------YGLSLISLSFL-------------MSVLLKKSFLTDLVVFLLTVS 374

  Fly   758 ---LMFDA---KLSVFESFLVDLSFTTAFAKGWGELIRMELQQEGLTVRHLIQVGPA--RSECAM 814
               |.|.|   .|.|...:|:.|....||..|..:|:|::.....       ...|.  .:|...
Mouse   375 CGSLGFTALYRYLPVSLEWLLSLLSPFAFMLGMVQLLRLDYDVNS-------NADPMGNPNEVIG 432

  Fly   815 ALLMFLLDLLLYAVIGLAYQR-------------------------------------YKKTDNY 842
            .:.|...|.:.|.::...:::                                     |:.:|: 
Mouse   433 TIFMLFFDGVFYLLLTFYFEKVLPSEYGRRHPPLFFLKSSFWSGQNPANRTALDNETDYEFSDD- 496

  Fly   843 SFVKVSRSQLDGKLGASLVNVSKLYGSKC----AVSNLSLDFARNQVSCLLGRNGAGKSTLIKLL 903
            ||..|| .:..||....:.|::|.|..|.    |:.:|:||..:.|::.:||.:|||||||:.:|
Mouse   497 SFEPVS-MEFHGKEAIRIRNLTKDYIQKSKRTEALKDLTLDVYKGQITAILGHSGAGKSTLLNVL 560

  Fly   904 TGQIRQSSGKVLLAGEHQ---------------VGVCWQDNILIPTLTAREHLQLYAQIKIPPGG 953
            :|....:.|.|.:   |.               .|||.|.|:....||.||:|:|:|:||     
Mouse   561 SGLCVPTKGWVTI---HNNKLSEMTDLENISKLTGVCPQCNVQFDFLTVRENLRLFAKIK----- 617

  Fly   954 SGGVE--EIRSEVAQTLQSLNFGKHESYPSWQLSGGYRRRLCVAIAFIASPSVVILDEPCNGVDA 1016
              |::  |:.:||.:.|..|:....::.....||||.:|:|...||.:..|.:.:||||..|:|.
Mouse   618 --GIQAHEVDNEVQRVLLELDMKNTQNILVQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDP 680

  Fly  1017 KARKDIWQLIERLRQGRAVIFATHFMDEAKYLSDSLVIMRNGRIIAQHSRDSLQRLCTSNYSIRL 1081
            .:|..:|..::..|..|.|:|:|.|||||..|:|..|.:..|::....|...|::.....|.:.|
Mouse   681 FSRHRVWNFLKERRADRVVLFSTQFMDEADILADRKVFISKGKLKCAGSSLFLKKKWGIGYHLSL 745

  Fly  1082 RCADATGVTFVIQKAQQLLPQTQVTHSGAADYPHSLTIN--------------------ASYAEH 1126
            :.::......:....:|.:|.::::........:.|.:.                    .:|...
Mouse   746 QLSETCVHERITSLVKQHIPDSKLSAESEGKLSYILPLERTNKFPDLYRDLERSPDLGIENYGVS 810

  Fly  1127 LTPGAVEFLELL------QSQVTAGSISDVELTTSSSLEQ--EFEQLNR--NGEDAGPRRPASDR 1181
            :|.....||:|.      ||.:  |...||:...:.|.|:  |.|||..  ||           |
Mouse   811 ITTLTEVFLKLEGKSSIDQSDI--GMTEDVQAGGARSPERFAEVEQLVSLLNG-----------R 862

  Fly  1182 SGVVAGPAMITDEPPTACKQFRLLMGKRLRHLSRNYRLLLYVLLLPALFELCAMWFVSYRLEDDF 1246
            ..:..|.|:...:   .|...||...| |:|..::..:|:.||.:..|..|.|.   .||:....
Mouse   863 CKMKGGMALWWQQ---LCAVTRLRFLK-LKHERKSIVILILVLGIGLLHILSAN---IYRMVRQS 920

  Fly  1247 DTVLPLSRSLY----------PQTAQFLSHERATSFSEKLYPQLRTSCDHLGECRVFNTSQQSYD 1301
            |....|:..:|          |.|...:.::......:.::                :..||:..
Mouse   921 DYCWELAPHMYFLTPGQQPQPPLTNLLIVNKTGAKIDDFIH----------------SLEQQNIA 969

  Fly  1302 WVLNSWGEYSERRYGGYGLNGSGATVWY-NNKGYHSMMAWLNDLNSELLRTTMNDSESSILTLNE 1365
            ..::::|    .|.|......:||.:.. :.|.|:..:| .|..........::...:.:|.|..
Mouse   970 LEVDAFG----TRNGTEDSQYNGAIILSGDEKNYNFTLA-CNTKRLNCFPVLVDIVSNGLLGLFA 1029

  Fly  1366 PWKLGFAELSTS-SILRQAGDG------SMVFILLIAFGLVVASGSVYLVNERVNGEKLQQRLCG 1423
            |    .|.:.|. |...:..|.      :..|:.::....|....|:..:::..|..:.|..:.|
Mouse  1030 P----SAHIQTDRSTFPEENDHRKFDYLAYFFLWVLLMACVPPYISMTSIDDYKNRAQFQLWISG 1090

  Fly  1424 VSAVTYWLVALVWDYLVMVLGLIVCLVVILMFGMPVFVDRQQLVGIIGLSLAFSFACVPSVHVAE 1488
            :|...||                        ||..:|........|:.:.:|| :|..|      
Mouse  1091 LSPSAYW------------------------FGQALFEVPVYCALILSIFIAF-YASAP------ 1124

  Fly  1489 KIFSDSSIAIVSIFCANLIVPLVTMGIILILGVVGDGPAWDDWRHALNQAFLIFPIHALGDGFLE 1553
               .:|...:..:|...|.|....|.:|.:..|:.                .|:.......|...
Mouse  1125 ---PESKFTVGDLFIQILYVGGYAMSVIFMTYVIS----------------FIYRKGRKNSGLWS 1170

  Fly  1554 LCKNYMVALVFRRYDIDSYKHPLASDLLGRHFTALLLVGVAALIINVLIEWHLLRRLWQRV---- 1614
            || .|:|:.....:.:..|...::.      |..:.||..|.|....|:  |...|.:..:    
Mouse  1171 LC-FYIVSFFSMCFMLIDYFRDISL------FVLIALVPPATLGGCTLL--HFENREFSEIIFEP 1226

  Fly  1615 ER-------------------LLDCTYRRELDKLGQLKLVNIQSIFKSCVDT------------- 1647
            ||                   :|.|..|    |.| :|.:....:|:....:             
Mouse  1227 EREYSYLFFLAPLLHFAIFVVILRCMER----KFG-MKTMRTDPVFRISPRSDRVFNNPEDPDGE 1286

  Fly  1648 GEAVRAENLWLA----------------------YR----------RGHYAVRNVNFSVQRGECF 1680
            .|.|..|.:|.|                      |:          :...|.||::|.|::||..
Mouse  1287 DEDVSQERVWTANALTSADFQEKPAIIASCLRKEYKGKKKCFVLKSKKKIATRNISFCVRKGEVV 1351

  Fly  1681 GLLGKNGAGKSTIFKLLTGQLQPDVGQIYF------EQPG-ISYCPQSNPLDPLLTTTECIRFYG 1738
            ||||.|||||||..|::||:.:|..||:..      :.|| :.||||.|.|...||..|.:..:.
Mouse  1352 GLLGHNGAGKSTSIKMITGETKPSAGQVLLKGSSTGDTPGFLGYCPQENALWLNLTVREHLEIFA 1416

  Fly  1739 RLRGIR--DLDQFLDRVLDTYELRPYKDVQVRNLSGGNRRKLTVAVTCCGCTPTVLMDEPTSDMD 1801
            .::|:|  |.:..::|:.|..:|:......|:.||.|.:|||...::..|....||:|||::.||
Mouse  1417 AIKGMRKSDANVAIERLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSVVLLDEPSTGMD 1481

  Fly  1802 PVTRDMVYATIEQLLL-ARRAVVLTSHSVSEIEHLCQRVAVLRAGQVIASDSPQRLKSEHGGYYA 1865
            |..:..::..|:.... ..|..:||:|.::|.|.:|.|||::.:|::....|.|.|||:.|..|.
Mouse  1482 PEGQQQMWQAIQATFSNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKEYL 1546

  Fly  1866 VTC-FCGPAQQAILSRSLNQRLPGARDLQHYAHSLRFLVRVRSPGSLGDAPLLSELFAILCDV-- 1927
            :.. ...|:|...|:..:.:..|.|...:.|:.    |:..:.|..  |...||:.|..|..|  
Mouse  1547 LEMKVKTPSQVEPLNTEIMRLFPQAARQERYSS----LMVYKLPRE--DVQPLSQAFFKLETVKQ 1605

  Fly  1928 CVNVARFSLSRCRFETVFERILDSSESNGSNGVHKDQQQQVAKNDLPSK 1976
            ..::..:|||:...|.||   |:.|:....:|..::....|....||.:
Mouse  1606 SFDLEEYSLSQSTLEQVF---LELSKEQELDGFEEELDPSVKWKLLPQE 1651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34120NP_001285513.1 ABC2_membrane_3 <621..760 CDD:289468 32/134 (24%)
ABC_subfamily_A 859..1073 CDD:213230 76/234 (32%)
drrA 865..1162 CDD:130256 92/345 (27%)
ABC2_membrane_3 1230..1601 CDD:289468 63/388 (16%)
Mem_trans 1436..>1552 CDD:304621 17/115 (15%)
ABC_subfamily_A 1651..1857 CDD:213230 76/247 (31%)
drrA 1666..1945 CDD:130256 94/291 (32%)
Abca8aXP_006533124.3 rim_protein <258..1630 CDD:130324 347/1521 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838392
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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