DRSC/TRiP Functional Genomics Resources

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Protein Alignment stg1 and Cacng2

DIOPT Version :10

Sequence 1:NP_001400987.1 Gene:stg1 / 318064 FlyBaseID:FBgn0288700 Length:1000 Species:Drosophila melanogaster
Sequence 2:NP_445803.2 Gene:Cacng2 / 84347 RGDID:71095 Length:323 Species:Rattus norvegicus


Alignment Length:259 Identity:66/259 - (25%)
Similarity:103/259 - (39%) Gaps:68/259 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 GYLWLITPVAASISVAIVIAALAGPQWLFTEEKLPNANYNGTANFKALDDGAYITK----YTKSS 283
            |...|:|.|.|..:.:::..|:....||::         .|....|::.:.....|    .|.|.
  Rat     7 GVQMLLTTVGAFAAFSLMTIAVGTDYWLYS---------RGVCKTKSVSENETSKKNEEVMTHSG 62

  Fly   284 LWILCT---TLPGLDADSYNCVKIDYFSNEG-YQPDPHDSTAAIPYTVTKSCPIFL----AAGVF 340
            ||..|.   ...||      |.:||:|..:. |:.|              :...||    |:.:|
  Rat    63 LWRTCCLEGNFKGL------CKQIDHFPEDADYEAD--------------TAEYFLRAVRASSIF 107

  Fly   341 LVISFI-VFLIPTCSHQNNLY------YFSAGILFIVSGLVMLIGLIAYISILKAEIGSKLRPRS 398
            .::|.| :|:...|...:..|      ..||||.|:.:||..:||:|.|||   |..|...:..|
  Rat   108 PILSVILLFMGGLCIAASEFYKTRHNIILSAGIFFVSAGLSNIIGIIVYIS---ANAGDPSKSDS 169

  Fly   399 TLQPALIKVSYGQSFFLFVFGFIVTEFVGVLNIFLFINLQ-------------EVSYYSRLPCF 449
            ...    ..|||.||:.....||:.|.||||.:.:||:..             :.|..:|:|.:
  Rat   170 KKN----SYSYGWSFYFGALSFIIAEMVGVLAVHMFIDRHKQLRATARATDYLQASAITRIPSY 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stg1NP_001400987.1 PMP22_Claudin 235..429 CDD:473919 54/212 (25%)
Cacng2NP_445803.2 PMP22_Claudin 6..197 CDD:395662 60/225 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 233..261
Blue background indicates that the domain is not in the aligned region.

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