DRSC/TRiP Functional Genomics Resources

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Protein Alignment stg1 and cacng4b

DIOPT Version :10

Sequence 1:NP_001400987.1 Gene:stg1 / 318064 FlyBaseID:FBgn0288700 Length:1000 Species:Drosophila melanogaster
Sequence 2:NP_001315032.1 Gene:cacng4b / 794222 ZFINID:ZDB-GENE-120104-6 Length:322 Species:Danio rerio


Alignment Length:260 Identity:73/260 - (28%)
Similarity:117/260 - (45%) Gaps:45/260 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 GYLWLITPVAASISVAIVIAALAGPQWLFTEEKLPNANYNGTANFKALDDGAYITKYTKSSLWIL 287
            |...|:..|.|.::.:::..|:....||::...:.||. |.:|:.............|.|.||.:
Zfish     7 GIQMLLATVGAFVAFSLMSIAIGTDYWLYSRAYICNAT-NASADETQTQPKKVRGDLTHSGLWRI 70

  Fly   288 CTTLPGLDADSYNCVKIDYFSNEGYQPDPHD-STAAIPYTVTKSCPIFLAAGVFLVISFIVFLI- 350
            | .:.||:..|  |.:|::|      ||.:| .|.:..|.:.    |..|:.||.::|.|:.|: 
Zfish    71 C-CIEGLNKGS--CYRINHF------PDDNDYDTDSSEYLLR----IVRASSVFPLLSTILLLLG 122

  Fly   351 PTC-------SHQNNLYYFSAGILFIVSGLVMLIGLIAYISILKAEIGSKLRPRSTLQPALIKVS 408
            ..|       :.:||: ..||||||:.:||..:||:|.|||....:...|.......|     .:
Zfish   123 GLCVGIGRIYNKRNNI-LLSAGILFVAAGLSNIIGIIVYISSNAGDPSDKRDEDKKNQ-----YN 181

  Fly   409 YGQSFFLFVFGFIVTEFVGVLNIFLFINL-QEVSY---------------YSRLPCFSVANIHAK 457
            ||.||:.....|||.|.|.||.:.::|.. :||.:               |||:|.|.....|::
Zfish   182 YGWSFYFGALSFIVAEAVAVLAVNIYIEKNKEVRFKARREFIKSTSSSSPYSRMPSFRYRRRHSR 246

  Fly   458  457
            Zfish   247  246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stg1NP_001400987.1 PMP22_Claudin 235..429 CDD:473919 58/202 (29%)
cacng4bNP_001315032.1 PMP22_Claudin 6..194 CDD:473919 57/206 (28%)

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