DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbc and Tbc1d2

DIOPT Version :10

Sequence 1:NP_608395.6 Gene:tbc / 318059 FlyBaseID:FBgn0052506 Length:1155 Species:Drosophila melanogaster
Sequence 2:XP_063143695.1 Gene:Tbc1d2 / 313234 RGDID:1306860 Length:925 Species:Rattus norvegicus


Alignment Length:643 Identity:124/643 - (19%)
Similarity:226/643 - (35%) Gaps:156/643 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   561 RHLSTVRTHLSGLVHGRITPEMKADEEG----LTKERWQLLNVNGVLENATEFYRLVYFGGVQPE 621
            |..:|......||...|...|.....|.    ||||......:..:|..|.|        ..|.|
  Rat   289 RQSNTFPFFSDGLARSRTAQEKVVALEQQVLMLTKELKSQKELVIILHKALE--------AAQQE 345

  Fly   622 LRQEVWPYLLGHYAFGSTTEDRKKQDETCKHYYETTMSEWLAVDAIVQQRE--------KEKTAR 678
            .|        ...|:.:.||||.:. |..:|...........|:|:.|.||        :|:..:
  Rat   346 KR--------ASSAYLAATEDRDRL-ELVRHKVRQIAELNQRVEALEQDRERLVHEAGLREQQVQ 401

  Fly   679 AV---AKLSSGSNSGNDRTVRAADLEAGGDLENEVFEDISDISDPGDLEFDEQQQQQQQQAECAV 740
            |:   .:|....|....:.:        ..|..::.||::                |.|.|: |.
  Rat   402 ALQQHVQLLMDKNQAKQQVI--------CKLSQKLTEDLA----------------QPQPAD-AT 441

  Fly   741 SGNHLTVKPIPRAMKTSTDSGHVDESF--NELDEPDEEDNKQKQQQDEKIS----------ESES 793
            :|:.|:.:.....:|...::......|  :|:.:..:...|..:::...::          :.||
  Rat   442 NGDFLSQQERLEHLKDDMEAYRTQNRFLNSEIHQVTKIWRKVAEKEKALLTKCAYLQARNCQVES 506

  Fly   794 K-LPDYRKLEEQINQEP------------------------SCSASTASSYETVGPGEVHQRPNS 833
            | |...|:|:|....||                        |...|..|.|:..|...|......
  Rat   507 KYLAGLRRLQEAAGAEPGDFPELLQQLVQEALQWEAGEASDSVGLSPVSEYDDYGFLTVPDYEVE 571

  Fly   834 DTR--------SVLSPEYLSADDLQLP-DDEDAVRPPPPPAAAAVIITKASVD------ITNWER 883
            |.:        .|.|...|:.:.::.| .|..|......|:|....:.:|.|.      :..|  
  Rat   572 DLKLLAKIQALEVRSHHLLALEAVERPLRDRWATLTELMPSAELKQLLRAGVPREHRPRVWRW-- 634

  Fly   884 SPKAAEGDQMSPLEEQAGESGGAGVNMDALQQPKSACASPASSNGGVYSSELLEQFGLNLHRIEK 948
                       .:..:......:|...:.|.:.: ||..||:                  .:||.
  Rat   635 -----------LVHRRVQHLHSSGCYQELLARGR-ACEHPAA------------------RQIEL 669

  Fly   949 DVQR---CDRNYWYFANENLDKLRNVISTYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFC 1010
            |:.|   .::::....:...||||.|:..:.|::..:||.||:..|.|..|::.:||..::.|..
  Rat   670 DLNRTFPTNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLEDEESAFWCLV 734

  Fly  1011 KLMERMIENFPSGGAMDMHFANMRSLIQILDSEMYDLMDSNGDYTHF---YFCYRWFLLDFKREL 1072
            .::|.::........:.....:.| ::|.|.||....:.::....|.   ...:.|||:.|...|
  Rat   735 AIVETILPAEYYSKTLTASQVDQR-VLQDLLSEKLPRLTAHLGQRHVDLSLITFNWFLVIFADSL 798

  Fly  1073 VYDDVFATWEVIWAAKHIASGHFVLF-LALALLETYRDII--LSNSMDFTDVIKFFNE 1127
            :.|.:...|:..     :..|..|:| .|||:.:...:.|  |.:|::....::||.:
  Rat   799 ISDILLRVWDAF-----LYEGTKVVFRYALAIFKYNEEAILRLQDSLEIYQYLRFFTK 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbcNP_608395.6 RUN_SGSM1_like 21..214 CDD:439049
PH_RUTBC 292..466 CDD:275431
TBC 923..1087 CDD:214540 36/169 (21%)
Tbc1d2XP_063143695.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.