DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbc and Sgsm1

DIOPT Version :9

Sequence 1:NP_001285494.1 Gene:tbc / 318059 FlyBaseID:FBgn0052506 Length:1155 Species:Drosophila melanogaster
Sequence 2:XP_017453793.1 Gene:Sgsm1 / 288743 RGDID:1308178 Length:1096 Species:Rattus norvegicus


Alignment Length:1196 Identity:544/1196 - (45%)
Similarity:736/1196 - (61%) Gaps:156/1196 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SDYKERLIASVKKEVKQLMEEAVTKKYVHEESSSVTSLCGAVEACLSQGLRRRALGLFKTSSTTA 73
            ::.::||:.:|||||||:||||||:|:|||:||.:.|.|.|||||:..||||||.|..:::...|
  Rat     8 AETRQRLLRTVKKEVKQIMEEAVTRKFVHEDSSHIISFCAAVEACVLHGLRRRAAGFLRSNKIAA 72

  Fly    74 LLHKIAKSCPEAEHISKLVQEIEASDPSKRS--SSSSDSFQRPPMLKKSSSNSMSTGTNAAASTS 136
            |..|:.|..|.||.:|:.|||:|....|.|:  ....::.::.|.|                   
  Rat    73 LFMKVGKGFPPAEELSRKVQELEQLIESARNQIQGLQENVRKLPKL------------------- 118

  Fly   137 SASASISVSASTSSMSLASMKYLWIRLALYEKRLTKIIEYLVSNASSFYDRDSLVADSDYGSILS 201
                        .::|..::|:||||.||:|:.|.||:.|||.|:|.:|::::|:.|...|.||:
  Rat   119 ------------PNLSPLAIKHLWIRTALFERVLDKIVHYLVENSSKYYEKEALLMDPVDGPILA 171

  Fly   202 SLLVGPCALEFTRAKTADHYWTDPHADELVQRHRI-SSCRRSSSTCSRPAI-INFKRSLNTSSDE 264
            ||||||||||:|:.|||||:||||.|||||||||| ||..|..|...|||: :.:.:..::|   
  Rat   172 SLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSSHLRQDSPTKRPALCVRWIQKRHSS--- 233

  Fly   265 AGTGSFKSIASASVAKDYVESLHQNAKATLLYGKNNVQVLPKDVAEPMPGYLSLHQHIQTLTIKW 329
               ||.....|.| |:|||||||||::||||||||||.|.|:|..|.:||||||||....:|:||
  Rat   234 ---GSMDDRPSIS-ARDYVESLHQNSRATLLYGKNNVLVQPRDDMEAVPGYLSLHQTADVMTLKW 294

  Fly   330 TPNQLMNGYTEAEEAEDID--KDAFWAYALNINVDEIVYVHCHQSRGEDSGGTVILVGQDGVQRP 392
            ||||||||     ...|:|  |..:|.||:.|.::||||:||||.  .||||||:||.|||:|||
  Rat   295 TPNQLMNG-----SVGDLDYEKSVYWDYAVTIRLEEIVYLHCHQQ--VDSGGTVVLVSQDGIQRP 352

  Fly   393 PIHFPEGGHMQQFLSCLETGLLPHGQLDPPLWSQRGIGKMFLWPRSMRRRILPSVMESV-----D 452
            |..||:|||:.|||||||.|||||||||||||||||.||:|  |: :|:|......||.     |
  Rat   353 PFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVF--PK-LRKRSPQGSSESTSSDKED 414

  Fly   453 ETPIDYVFRIVSKSRHEEF-------AATHSILDFVRSTPRRAQLSSCSTTGSSD-CSNKSLSID 509
            :...||||||:......||       .:.:::....:.:||::..||||.:||:| .|....:.:
  Rat   415 DEATDYVFRIIYPGTQSEFVPQDLMDVSMNNLPSLWQPSPRKSSCSSCSQSGSADGSSTNGCNHE 479

  Fly   510 QFPMESPLILQQQQQQQQQLLQAQSTSIEMVCSTMRRQIISRAFYGWLAYCRHLSTVRTHLSGLV 574
            :.|                        ::::|..|:.||:||||||||||||||||||||||.||
  Rat   480 RAP------------------------LKLLCDNMKYQILSRAFYGWLAYCRHLSTVRTHLSALV 520

  Fly   575 -HGRITPEMKADE-EGLTKERWQLLNVNGVLENATEFYRLVYFGGVQPELRQEVWPYLLGHYAFG 637
             |..::|::..|. :|||...|:....:.......|..||:|:||||||:|:.|||:|||||.||
  Rat   521 NHMIVSPDLPCDAGQGLTASIWEQYIQDSTTYPEQELLRLIYYGGVQPEIRRAVWPFLLGHYQFG 585

  Fly   638 STTEDRKKQDETCKHYYETTMSEWLAVDAIVQQREKEKTARAVAKLSSGSNSGN--------DRT 694
            .|..:||:.||.....|..||||||..:|||:|||:|..|.|:||.|||::..:        |.|
  Rat   586 MTEMERKEVDEQIHACYAQTMSEWLGCEAIVRQRERESHAAALAKCSSGASLDSHLHRMLHRDST 650

  Fly   695 V------------RAADLEAGGDLENEVFEDISDISDPGDLEFDEQQQQQQQQAECAVSGNHLTV 747
            :            :...|::......:|||.:.::      |..|.:.:.:::.....:||    
  Rat   651 ISNESSQSCSSGRQNLRLQSDSSSSTQVFESVDEV------EQTEAEGRSEEKHPKIPNGN---- 705

  Fly   748 KPIPRAMKTSTDSGHVDESFNELDEPDEEDNKQKQQQDEKISESESKLPD-YRKLEEQINQEPSC 811
               |.....|.||||  .|.:.......|.::.....::.:.:.:..||. :|..:..:....|.
  Rat   706 ---PANGTCSPDSGH--PSSHNFSSGLSEHSEPSLSTEDSVLDVQRSLPAVFRPGDSSVEDGQSS 765

  Fly   812 SASTASSYETVGPGE---VHQRPNSDTRSVLS-PEYLSAD---DLQLPDDEDAVRPPPPPAAAAV 869
            .|:|:   ....|.|   |.....||..:..| .|::|..   |:.||:.:.|:....|..|   
  Rat   766 EATTS---RDEAPREELAVQDSLESDLLANESLEEFMSIPGSLDVALPEKDGAMMDGWPGEA--- 824

  Fly   870 IITKASVDITNWERSPKAAEGDQMSPLEEQAGESGGAGVNMDALQQPKSACASPASSNGGVYSSE 934
                        ::..:|...|.:|  ||...||....:...|:....:...||.||:|..||.|
  Rat   825 ------------DKHGRADSEDNLS--EEPEMESLFPALASLAVTSSANNETSPVSSSGVTYSPE 875

  Fly   935 LLEQFGLNLHRIEKDVQRCDRNYWYFANENLDKLRNVISTYVWEHLDVGYMQGMCDLVAPLLVIF 999
            ||:.:.:||||||||||||||:||||...||:||||::.:|:|:|:::||:||||||:||||||.
  Rat   876 LLDLYTVNLHRIEKDVQRCDRSYWYFTAANLEKLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVIL 940

  Fly  1000 DDESLSYSCFCKLMERMIENFPSGGAMDMHFANMRSLIQILDSEMYDLMDSNGDYTHFYFCYRWF 1064
            |||:|::|||.:||:||.:|||.|||||.|||||||||||||||:::||..||||||||||||||
  Rat   941 DDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWF 1005

  Fly  1065 LLDFKRELVYDDVFATWEVIWAAKHIASGHFVLFLALALLETYRDIILSNSMDFTDVIKFFNEMA 1129
            ||||||||||||||:.||.||||||::|.|:|||:||||:|.||||||.|:|||||:||||||||
  Rat  1006 LLDFKRELVYDDVFSVWETIWAAKHVSSAHYVLFIALALVEVYRDIILENNMDFTDIIKFFNEMA 1070

  Fly  1130 ERHNAQSVLQLARSLVLQLQMIIENK 1155
            |||||:.:|||||.||.::|::||||
  Rat  1071 ERHNAKQILQLARDLVHKVQILIENK 1096

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbcNP_001285494.1 RUN 45..218 CDD:280855 65/174 (37%)
PH_RUTBC 292..466 CDD:275431 107/180 (59%)
TBC 923..1087 CDD:214540 118/163 (72%)
Sgsm1XP_017453793.1 RUN 44..186 CDD:397055 64/172 (37%)
PH_RUTBC 257..428 CDD:275431 107/180 (59%)
TBC <884..1053 CDD:214540 126/168 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 297 1.000 Domainoid score I1402
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H64485
Inparanoid 1 1.050 977 1.000 Inparanoid score I298
OMA 1 1.010 - - QHG48923
OrthoDB 1 1.010 - - D171826at2759
OrthoFinder 1 1.000 - - FOG0002045
OrthoInspector 1 1.000 - - otm44623
orthoMCL 1 0.900 - - OOG6_103962
Panther 1 1.100 - - O PTHR22957
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1347
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.880

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