DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbc and Rabgap1

DIOPT Version :9

Sequence 1:NP_001285494.1 Gene:tbc / 318059 FlyBaseID:FBgn0052506 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_001349885.1 Gene:Rabgap1 / 227800 MGIID:2385139 Length:1064 Species:Mus musculus


Alignment Length:536 Identity:118/536 - (22%)
Similarity:207/536 - (38%) Gaps:126/536 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   668 VQQREKEKTA--RAVAKLSSGSNSGNDRTVRAADLEAGGDLENEVFEDISDISDPGDLEFDEQQQ 730
            |||...::.|  |....|.|......:..:...|||:.|...:.....|:...:|....|....:
Mouse   328 VQQTANKELAIERCFGLLLSPGKDVRNSDMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNE 392

  Fly   731 QQQQQAECAVSGNHLTVKPIPRAMKTSTDSGHVDESFNELDEPDE---EDNKQKQQQDEKI---- 788
            :              |.|.....|.|:     ||....|:.||..   |...:....:|::    
Mouse   393 E--------------TPKDKVLFMTTA-----VDLVITEVQEPVRFLLETKVRVCSPNERLFWPF 438

  Fly   789 SESESKLPDYRKLEEQINQEPSCSASTASSYETV---GPGEVHQRPNSDTRSVLSPEYLSADDLQ 850
            |:..:....:.||::...:|...:|.|.  ||.|   ...|..:|..:.:.||..|:..|...: 
Mouse   439 SKRSTTENFFLKLKQIKQKEKKNNADTL--YEVVCLESESERERRKTTASPSVRLPQSGSQSSM- 500

  Fly   851 LP----DDEDAVRPPP---------PPAAAAVIITKASVDITNWERS----PKAAEGDQMSPLEE 898
            :|    |||:.....|         ...|..::.|...: ::.|..:    ||     |:|.|..
Mouse   501 IPSPPEDDEEEDNDEPLLSGFGDVSKECAEKILETWGEL-LSKWHLNLSVRPK-----QLSSLVR 559

  Fly   899 QAGESGGAGVNMDALQQPKSACASPASSNGGVY--------SSELLEQFGLNLHR-------IEK 948
                   :||              |.:..|.|:        :..|:|::.:.:.:       |.:
Mouse   560 -------SGV--------------PEALRGEVWQLLAGCHNNDHLVEKYRILITKESPQDSAITR 603

  Fly   949 DVQRCDRNYWYF---ANENLDKLRNVISTYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFC 1010
            |:.|....:.||   ..:..|.|..:...|.....::||.||...|.|.||:...:|. ::|...
Mouse   604 DINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQ-AFSVLV 667

  Fly  1011 KLM------ERMIENFPSGGAMDMH--FANMRSLIQILDSEMYD-LMDSNGDYTHFYFCYRWFLL 1066
            |:|      |...:||.     |:|  |..:..|:|....::|: .:|.:.: .|.| ..:|||.
Mouse   668 KIMFDYGLRELFKQNFE-----DLHCKFYQLERLMQEYIPDLYNHFLDISLE-AHMY-ASQWFLT 725

  Fly  1067 DFKRELVYDDVFATWEVIWAAKHIASGHFVLF-LALALLETYRDIILSNSMDFTDVIKFFN-EMA 1129
            .|..:.....||...:::     :..|..|:| :||.||:|.:|.:|..  ||...:|||. ::.
Mouse   726 LFTAKFPLYMVFHIIDLL-----LCEGISVIFNVALGLLKTSKDDLLLT--DFEGALKFFRVQLP 783

  Fly  1130 ERH----NAQSVLQLA 1141
            :|:    ||:.:::||
Mouse   784 KRYRSEENAKRLMELA 799

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbcNP_001285494.1 RUN 45..218 CDD:280855
PH_RUTBC 292..466 CDD:275431
TBC 923..1087 CDD:214540 43/190 (23%)
Rabgap1NP_001349885.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..101
PTB_Rab6GAP 140..268 CDD:269922
DUF3694 302..432 CDD:315198 24/122 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 478..520 10/42 (24%)
TBC 558..767 CDD:214540 54/242 (22%)
ERM 789..1013 CDD:330563 4/11 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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