DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbc and sgsm2

DIOPT Version :9

Sequence 1:NP_001285494.1 Gene:tbc / 318059 FlyBaseID:FBgn0052506 Length:1155 Species:Drosophila melanogaster
Sequence 2:XP_002935339.2 Gene:sgsm2 / 100494226 XenbaseID:XB-GENE-6050632 Length:1058 Species:Xenopus tropicalis


Alignment Length:1196 Identity:527/1196 - (44%)
Similarity:692/1196 - (57%) Gaps:184/1196 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NADGSDYKERLIASVKKEVKQLMEEAVTKKYVHEESSSVTSLCGAVEACLSQGLRRRALGLFKTS 69
            |......||:|:.:|||||||:||||||:|:|||:||.:.:|||.|||||...|:|||.|..::.
 Frog     2 NCSDDSAKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGVVEACLLHLLKRRAAGFLRSD 66

  Fly    70 STTALLHKIAKSCPEAEHISKLVQEIEASDPSKRSSSSSDSFQRPPMLKKSSSNSMSTGTNAAAS 134
            ...||..|:||:|..|..|.|.||:::.....:::.||...     .||:.||   :||      
 Frog    67 KVAALFMKVAKTCATAADICKKVQDLQQQVEGRKNISSGQE-----SLKRQSS---TTG------ 117

  Fly   135 TSSASASISVSASTSSMSLASMKYLWIRLALYEKRLTKIIEYLVSNASSFYDRDSLVADSDYGSI 199
                        .|.:::..::|::|:|.||.||.|.||::|:|.|.|.:|:::||::|...|.|
 Frog   118 ------------RTVTLTPQALKHIWVRTALIEKVLDKIVQYIVDNCSKYYEKESLMSDPVCGPI 170

  Fly   200 LSSLLVGPCALEFTRAKTADHYWTDPHADELVQRHRISSCR-RSSSTCSRPAIINFKRSLNTSSD 263
            |::|||||||||:|:.||||||||||.||||||||||.... |..|.|.|||:...||.      
 Frog   171 LAALLVGPCALEYTKLKTADHYWTDPSADELVQRHRIHGAHSRQDSPCKRPALSIKKRH------ 229

  Fly   264 EAGTGSFKSIASASVAKDYVESLHQNAKATLLYGKNNVQVLPKDVAEPMPGYLSLHQHIQTLTIK 328
              .:||......|:.|::||||||||::..||||||||.|.||:..|.:||||||||..:.||:|
 Frog   230 --SSGSMSEDKFAASAREYVESLHQNSRTHLLYGKNNVLVQPKEDKEAIPGYLSLHQSGENLTLK 292

  Fly   329 WTPNQLMNGYTEAEEAEDIDKDAFWAYALNINVDEIVYVHCHQSRGEDSGGTVILVGQDGVQRPP 393
            ||||||:||.....|   ::|..||.|||.:.:.:||.:||||.  .||.||::||.|||:||||
 Frog   293 WTPNQLLNGTLGDSE---LEKSVFWDYALIVPISQIVCIHCHQQ--PDSRGTLVLVSQDGIQRPP 352

  Fly   394 IHFPEGGHMQQFLSCLETGLLPHGQLDPPLWSQRGIGKMFLWPRSMRRRILPSVMESVD------ 452
            :|||.|||:..||||||.||||.|||:||||||||.||:|  |:..:|.   |..:|||      
 Frog   353 LHFPPGGHLLAFLSCLENGLLPRGQLEPPLWSQRGKGKVF--PKLRKRN---SSNKSVDFDDNVV 412

  Fly   453 -ETPIDYVFRIV-SKSRHEEFAATHSILDFVRSTP----------RRAQLSSCSTTGSSDCSNKS 505
             |...||||||: :..:|:.....:..|...||..          ..|.||..|:...:...:..
 Frog   413 EEITTDYVFRIIYAGHKHDNITINYHHLAASRSVSVDDDEEEEDRLHAMLSMISSRNLTAPKSMK 477

  Fly   506 LSIDQFPMES------PLILQQQQQQQQQLLQAQSTS-----------------IEMVCSTMRRQ 547
            .|.|...|:.      |..|.:...|....|...:.|                 ::::|..|::|
 Frog   478 ESGDVIEMQGFGANLLPWQLNEFCSQGSSCLSCSTGSSPYDIPSCCSCVHDRAPLKLLCENMKKQ 542

  Fly   548 IISRAFYGWLAYCRHLSTVRTHLSGLV-HGRITPEMKADEE-GLTKERWQLLNVNGVLENATEFY 610
            |:||||||||||||||||||||||.|| |..|.|:...|.. |||||.|.....:.......|..
 Frog   543 IVSRAFYGWLAYCRHLSTVRTHLSALVNHSIIPPDKPTDASGGLTKEVWSKYEKDMKNYKELELL 607

  Fly   611 RLVYFGGVQPELRQEVWPYLLGHYAFGSTTEDRKKQDETCKHYYETTMSEWLAVDAIVQQREKEK 675
            ||||:|||:.|:|:||||:|||||.||.|.::..:.||.....|:..|:||.|.:.||:|||||.
 Frog   608 RLVYYGGVEHEIRKEVWPFLLGHYKFGMTKKEMDRVDEAIAARYQKVMAEWKACEVIVKQREKES 672

  Fly   676 TARAVAKLSSGSNSGNDRTVRAADLEAGGDLENEVFEDISDISDPGDLEFDEQQQQQQQQAECAV 740
            .:...|||||||:.  |..|:.. :.....:.|:||....:| |..|.:......:....|...|
 Frog   673 HSAIYAKLSSGSSI--DSHVQRL-IHRDSTISNDVFMSTEEI-DITDRDLKGHNGKASNLASTPV 733

  Fly   741 SGNHLTVKPIPRAMKTSTDSGHVDESFNELDEPDEEDNKQKQQQDEKISESESKLPDYRKLEEQI 805
            :   |.|.|               :...|.|.||                  |.||..|..    
 Frog   734 A---LAVDP---------------QQSVEFDSPD------------------SGLPSSRNY---- 758

  Fly   806 NQEPSCSASTASSYETVGPGEVHQRPNSDTRSVLSPEYLSADDLQ-LPDDEDAVRPPPPPAAAAV 869
                                       |.|..:||    |.||.| :..:|:............|
 Frog   759 ---------------------------SVTSGILS----SIDDGQSICFEEEESNTESDRTEMTV 792

  Fly   870 IITKASVDITNWERSPKAAEGDQMSPLEEQAGESGGAGVNMDALQQPKSACASPASSNGGVYSSE 934
            ..|:.|..|...:.|  .:|....|.|:           .::..:...|.|  |.|     |:.|
 Frog   793 CPTRKSKGILKMQES--ISEEQLSSQLD-----------YLNTAEDISSMC--PTS-----YTIE 837

  Fly   935 LLEQFGLNLHRIEKDVQRCDRNYWYFANENLDKLRNVISTYVWEHLDVGYMQGMCDLVAPLLVIF 999
            ||:...||||||:|||||||||||||.:|||:||||::.:|||||||:||:||||||:|||:|:.
 Frog   838 LLDTIALNLHRIDKDVQRCDRNYWYFTDENLEKLRNIMCSYVWEHLDIGYVQGMCDLLAPLMVVL 902

  Fly  1000 DDESLSYSCFCKLMERMIENFPSGGAMDMHFANMRSLIQILDSEMYDLMDSNGDYTHFYFCYRWF 1064
            |::.|:||||.:||:||.:|||:|||||.|||||||||||||||:::||..||||||||||||||
 Frog   903 DNDLLAYSCFTQLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWF 967

  Fly  1065 LLDFKRELVYDDVFATWEVIWAAKHIASGHFVLFLALALLETYRDIILSNSMDFTDVIKFFNEMA 1129
            ||||||||:|:||||.|||||||:.|:|.|||||:||||:|.||:|:..|:|||||:||||||||
 Frog   968 LLDFKRELLYEDVFAVWEVIWAARLISSEHFVLFIALALVEVYREIVRDNNMDFTDIIKFFNEMA 1032

  Fly  1130 ERHNAQSVLQLARSLVLQLQMIIENK 1155
            |.|:||.:|::||.||.::|.:||||
 Frog  1033 EHHDAQLILRIARDLVHKVQTLIENK 1058

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbcNP_001285494.1 RUN 45..218 CDD:280855 65/172 (38%)
PH_RUTBC 292..466 CDD:275431 100/181 (55%)
TBC 923..1087 CDD:214540 118/163 (72%)
sgsm2XP_002935339.2 RUN 42..189 CDD:280855 65/172 (38%)
PH_RUTBC 256..427 CDD:275431 100/180 (56%)
TBC <846..1013 CDD:214540 126/166 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 299 1.000 Domainoid score I1424
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 958 1.000 Inparanoid score I332
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D171826at2759
OrthoFinder 1 1.000 - - FOG0002045
OrthoInspector 1 1.000 - - mtm9377
Panther 1 1.100 - - O PTHR22957
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1347
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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