DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbc and sgsm1a

DIOPT Version :9

Sequence 1:NP_001285494.1 Gene:tbc / 318059 FlyBaseID:FBgn0052506 Length:1155 Species:Drosophila melanogaster
Sequence 2:XP_009299656.1 Gene:sgsm1a / 100270734 ZFINID:ZDB-GENE-060526-379 Length:1392 Species:Danio rerio


Alignment Length:1479 Identity:572/1479 - (38%)
Similarity:762/1479 - (51%) Gaps:426/1479 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SDYKERLIASVKKEVKQLMEEAVTKKYVHEESSSVTSLCGAVEACLSQGLRRRALGLFKTSSTTA 73
            ::.::||:.:|||||||:||||||:|:|||:||.:.|.|.|||||:..||:|||.|..:::...|
Zfish     8 AETRQRLLRNVKKEVKQIMEEAVTRKFVHEDSSHIVSFCAAVEACVLHGLKRRAAGFLRSNKIAA 72

  Fly    74 LLHKIAKSCPEAEHISKLVQEIEASDPSKRSSSSSDSFQRPPMLKKSSSNSMSTGTNAAASTSSA 138
            |..|:||:.|.||.:.:..||:|....::||.                                 
Zfish    73 LFTKVAKNFPPAEELCRKAQELELVFENRRSQ--------------------------------- 104

  Fly   139 SASISVSASTSSM------SLASMKYLWIRLALYEKRLTKIIEYLVSNASSFYDRDSLVADSDYG 197
              |:|.|.||..|      |..:::::||..||.||.|.||:.|||.|:|.||::::::.|...|
Zfish   105 --SLSYSESTRKMPKVLNFSPQAVRHVWIHAALIEKVLDKIVLYLVENSSKFYEKEAILMDPVDG 167

  Fly   198 SILSSLLVGPCALEFTRAKTADHYWTDPHADELVQRHRISS--CRRSSSTCSRPAIINFKRSLNT 260
            .||:||||||||||:|:.|||||:||||.||||||||||.|  ||:.|.| .|||:...||..::
Zfish   168 PILASLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSGHCRQDSPT-KRPALCIQKRHSSS 231

  Fly   261 SSDEAGTGSFKSIASASVAKDYVESLHQNAKATLLYGKNNVQVLPKDVAEPMPGYLSLHQHIQTL 325
            |.||..:.|       ..|:|||||||||::||||:|||||.|.|:|..|.:||||||||....:
Zfish   232 SMDERPSPS-------PSARDYVESLHQNSRATLLFGKNNVLVQPRDDMEAVPGYLSLHQTADYM 289

  Fly   326 TIKWTPNQLMNGYTEAEEAEDID--KDAFWAYALNINVDEIVYVHCHQSRGEDSGGTVILVGQDG 388
            |:||||||||||     ...|:|  |..:|.||:.|.::||||:||||.  .|.||||:||.|||
Zfish   290 TLKWTPNQLMNG-----SVGDLDYEKSVYWDYAMTIRLEEIVYLHCHQQ--VDCGGTVVLVSQDG 347

  Fly   389 VQRPPIHFPEGGHMQQFLSCLETGLLPHGQLDPPLWSQRGIGKMFLWPRSMRRRILP-----SVM 448
            :||||:.||.|||:.|||||||.|||||||||||||||||.||:|  |:..:|  .|     ||.
Zfish   348 IQRPPLRFPRGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVF--PKLKKR--CPQGSSESVS 408

  Fly   449 ESVDETPIDYVFRIVSKSRHEEFAA-THS------------------------------------ 476
            :..:|...|||||||..:...||.. |||                                    
Zfish   409 DKEEEEATDYVFRIVFPNSQSEFVTITHSTHLSLNSRALWPPKCQTLVMPKHHRSSPGESPSSPE 473

  Fly   477 ------ILD----FVRSTPRRAQLSSCSTTGSSD------CSNKSLSIDQFPMESPLILQQQQQQ 525
                  ::|    ....|||::..||||....||      |::                      
Zfish   474 PSLAPELIDQGANMWHPTPRKSSCSSCSQNSFSDGAQPNGCNH---------------------- 516

  Fly   526 QQQLLQAQSTSIEMVCSTMRRQIISRAFYGWLAYCRHLSTVRTHLSGLV-HGRITPEMKADE-EG 588
                   :.|.::::|..|:.|||||||||||||||||||||||||||| |..:.|::.:|. .|
Zfish   517 -------ERTPLKLLCDNMKNQIISRAFYGWLAYCRHLSTVRTHLSGLVNHTIVEPDVPSDAYSG 574

  Fly   589 LTKERWQLLNVNGVLENATEFYRLVYFGGVQPELRQEVWPYLLGHYAFGSTTEDRKKQDETCKHY 653
            ||.|.||....:.......|..||||||||:|.||:||||:|||||.||.:..:||:.||..:..
Zfish   575 LTTEVWQKFLQDCSTYEEKELLRLVYFGGVEPSLRKEVWPFLLGHYQFGMSETERKEVDEQMRAC 639

  Fly   654 YETTMSEWLAVDAIVQQREKEKTARAVAKLSSGSNSGN--------DRTVR-------AADLEAG 703
            ||.||||||..:|||:|:|||:.|.|:||.|||::..:        |.|:.       ::|.:..
Zfish   640 YEQTMSEWLGCEAIVKQKEKEQHAVALAKCSSGASMDSTTQRIMHRDSTISNESSQSCSSDRQRD 704

  Fly   704 GDLEN---------------------------EVFEDISDISDPGDLEFDEQQQQQQQQAECAVS 741
            ..|::                           :|||.:.::.     :.:.:.:....:..|.:|
Zfish   705 SRLQSDSSSGTQFITSQKPFPWSSLLPFGLFLQVFESVEEVE-----QIESEPKNDVGKQVCKIS 764

  Fly   742 GNHLTVKPIPRAMKTSTDSGH-----------VDESFNELDEPDEEDNKQKQ------------- 782
            ..      .|:...:|.||||           ..:|.:..|....|.|.:.|             
Zfish   765 NG------TPQNGTSSPDSGHPSSRNFSVTSGQSDSLSTEDSGIHEPNLKSQPQLTASKEKAACC 823

  Fly   783 -QQDEKISESESKL-----------PDYRK--LEEQINQEPSCS-------------------AS 814
             ::.::..|.|:|:           .:..|  |:|.:.||...:                   ||
Zfish   824 GEEGKETEERETKMVMKQGVREDNKTEVNKVLLDEVVTQESKKATEDSEVKMDISKTARDAFVAS 888

  Fly   815 TA--SSYETVGPGEV--------------HQRPN-----------------SDTR---------- 836
            ||  |....:..||.              |..|:                 ::||          
Zfish   889 TADHSQVTKMEVGESLERSLTSENDALTRHTEPDIPKATEVMESTPPERKMNETRVRADIERPHK 953

  Fly   837 -----SVLSPEYLSADDLQLPD------------------------------------------- 853
                 :.:..:.|.|.||::.|                                           
Zfish   954 GIKDITAIREQPLIAKDLKVSDALEQKVVADIQVSVSEDTEKEATKTNETSKDNDSKTWMDEENN 1018

  Fly   854 ---------------DE---------DAVRPPPPPAAAAVIITKA--------SVDITNWERSPK 886
                           ||         |..|..|.......::.:|        :.|.|..:.||.
Zfish  1019 VRVLKPIDEKTSDLADEAGPTGKRKADMQRKAPVVEETVPLVHEAFSNRKMSEAQDETESDESPS 1083

  Fly   887 AAEGDQM----------SP----------------LEEQAGESGGAGVNMD-------------- 911
            |.|.:::          ||                |||..|:.....||.:              
Zfish  1084 AIEMEEIPTAKVWERKSSPKRRTTEQATIPALELRLEEAHGKLSSEEVNPEKPEMESLCPQLDSL 1148

  Fly   912 ALQQPKSACASPASSNGGVYSSELLEQFGLNLHRIEKDVQRCDRNYWYFANENLDKLRNVISTYV 976
            |:...|...:||.||.|..||.|||:.:.||||||:|||||||||||||...||:||||::.:||
Zfish  1149 AVNTEKIEASSPVSSIGTTYSQELLDMYTLNLHRIDKDVQRCDRNYWYFTPANLEKLRNIMCSYV 1213

  Fly   977 WEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFPSGGAMDMHFANMRSLIQILD 1041
            |:||::||:||||||:||||||.|||::::|||.:||:||.:|||.|||||.|||||||||||||
Zfish  1214 WQHLEIGYVQGMCDLLAPLLVILDDEAMAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILD 1278

  Fly  1042 SEMYDLMDSNGDYTHFYFCYRWFLLDFKRELVYDDVFATWEVIWAAKHIASGHFVLFLALALLET 1106
            :|:::||..|||||||||||||||||||||||||||||.||.|||||.::|.|||||:||:|:|.
Zfish  1279 AELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFAVWETIWAAKCVSSSHFVLFIALSLVEI 1343

  Fly  1107 YRDIILSNSMDFTDVIKFFNEMAERHNAQSVLQLARSLVLQLQMIIENK 1155
            ||||||.|:|||||:|||||||||.||.:.:|.|:|.||.::|.:||||
Zfish  1344 YRDIILENNMDFTDIIKFFNEMAEHHNIKQILTLSRDLVCKVQTLIENK 1392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbcNP_001285494.1 RUN 45..218 CDD:280855 65/178 (37%)
PH_RUTBC 292..466 CDD:275431 106/180 (59%)
TBC 923..1087 CDD:214540 120/163 (74%)
sgsm1aXP_009299656.1 RUN 44..188 CDD:280855 65/178 (37%)
PH_RUTBC 256..425 CDD:275431 106/179 (59%)
TBC 1168..1349 CDD:214540 133/180 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 294 1.000 Domainoid score I1468
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H64485
Inparanoid 1 1.050 942 1.000 Inparanoid score I333
OMA 1 1.010 - - QHG48923
OrthoDB 1 1.010 - - D171826at2759
OrthoFinder 1 1.000 - - FOG0002045
OrthoInspector 1 1.000 - - mtm6445
orthoMCL 1 0.900 - - OOG6_103962
Panther 1 1.100 - - O PTHR22957
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3416
SonicParanoid 1 1.000 - - X1347
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.010

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