DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbc and sgsm1

DIOPT Version :9

Sequence 1:NP_001285494.1 Gene:tbc / 318059 FlyBaseID:FBgn0052506 Length:1155 Species:Drosophila melanogaster
Sequence 2:NP_001106422.2 Gene:sgsm1 / 100127590 XenbaseID:XB-GENE-6043600 Length:1096 Species:Xenopus tropicalis


Alignment Length:1239 Identity:560/1239 - (45%)
Similarity:736/1239 - (59%) Gaps:227/1239 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVQGNADGSDYKERLIASVKKEVKQLMEEAVTKKYVHEESSSVTSLCGAVEACLSQGLRRRALGL 65
            |..|.|: :|.:::|:.:|||||||:||||||:|:|||:||.:.|.|.|||||:..||:|||.|.
 Frog     1 MATGTAE-ADTRQKLLKTVKKEVKQIMEEAVTRKFVHEDSSHIISFCAAVEACVLYGLKRRAAGF 64

  Fly    66 FKTSSTTALLHKIAKSCPEAEHISKLVQEIEASDPSKRSSSSSDSFQRPPMLKKSSSNSMSTGTN 130
            .:::...||..|:|||.|.||.:.:.||::|                   .|.::..|.|     
 Frog    65 LRSNKIAALFMKVAKSFPLAEELCRKVQDLE-------------------QLLENKRNQM----- 105

  Fly   131 AAASTSSASASISVSASTSSMSLASMKYLWIRLALYEKRLTKIIEYLVSNASSFYDRDSLVADSD 195
                 .....|:..:....::|..::|:||||.||.||.|.||:.|||.|.:.:|::::|:.|..
 Frog   106 -----QGVQESVRKAQKLPNLSPQAIKHLWIRTALIEKVLDKIVLYLVENCNKYYEKEALLMDPV 165

  Fly   196 YGSILSSLLVGPCALEFTRAKTADHYWTDPHADELVQRHRI--SSCRRSSSTCSRPAIINFKRSL 258
            .|.||:||||||||||:|:.|||||:||||.||||||||||  |.||:.|.| .|||:...||..
 Frog   166 DGPILASLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSSHCRQDSPT-KRPALCIQKRHS 229

  Fly   259 NTSSDEAGTGSFKSIASASVAKDYVESLHQNAKATLLYGKNNVQVLPKDVAEPMPGYLSLHQHIQ 323
            :.|.|:..:.|         |:|||||||||::||||:|||||.|.|:|..|.:||||||||...
 Frog   230 SGSMDDRPSMS---------ARDYVESLHQNSRATLLFGKNNVMVQPRDDMEAIPGYLSLHQSAD 285

  Fly   324 TLTIKWTPNQLMNGYTEAEEAEDID--KDAFWAYALNINVDEIVYVHCHQSRGEDSGGTVILVGQ 386
            |:|:||||||||||     ...|:|  |..:|.||:.|.::||||:||||.  .||||||:||.|
 Frog   286 TMTLKWTPNQLMNG-----SVGDLDYEKSVYWDYAMTIRLEEIVYLHCHQQ--VDSGGTVVLVSQ 343

  Fly   387 DGVQRPPIHFPEGGHMQQFLSCLETGLLPHGQLDPPLWSQRGIGKMFLWPRSMRRRILPSVMESV 451
            ||:||||:.||.|||:.|||||||.|||||||||||||||||.||:|  |: :|:|......||.
 Frog   344 DGIQRPPLRFPRGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVF--PK-LRKRSPQGSSESA 405

  Fly   452 ----DETPIDYVFRIVSKSRHEEFAATHSILD--------FVRSTPRRAQLSSCSTTGSSD---- 500
                ::...||||||:......||.| ..::|        ..:.:.|::..||||.:||||    
 Frog   406 SDKEEDEATDYVFRIIYPGSQCEFVA-QELIDPQGGGLPSMWQPSTRKSSCSSCSQSGSSDGGPS 469

  Fly   501 --CSNKSLSIDQFPMESPLILQQQQQQQQQLLQAQSTSIEMVCSTMRRQIISRAFYGWLAYCRHL 563
              |:::         .:||                    :|:|..|:.||:||||||||||||||
 Frog   470 NGCNHE---------RAPL--------------------KMLCDNMKYQIVSRAFYGWLAYCRHL 505

  Fly   564 STVRTHLSGLVHGRIT-PEMKADEE-GLTKERWQLLNVNGVLENATEFYRLVYFGGVQPELRQEV 626
            ||||||||.||:.:|. |::..|.. |||...||....:.......|..||:|:||:|.|:|:||
 Frog   506 STVRTHLSALVNHKIVYPDVPVDASFGLTVAIWQKYLEDSKSYEEQELLRLIYYGGIQHEIRREV 570

  Fly   627 WPYLLGHYAFGSTTEDRKKQDETCKHYYETTMSEWLAVDAIVQQREKEKTARAVAKLSSGSN--- 688
            ||:|||||.||.|.|||::.||..:..||.||:|||..:|||:|||||..|.|:.|.|||::   
 Frog   571 WPFLLGHYQFGMTEEDRREVDEQIRACYEQTMAEWLGCEAIVRQREKESHAAALLKCSSGASLDI 635

  Fly   689 -----SGNDRTV-------------RAADLEAGGDLENEVFEDISDISDPGDLEFDEQQQQQQQQ 735
                 ...|.||             ..|.|::......:|||.:            |:.:|.:.:
 Frog   636 QIQRMMHRDSTVSNESSQSCSSDRQNHARLQSDSSSSTQVFESV------------EEAEQIEAR 688

  Fly   736 AE----------------CAVSGNHLTVKPIPRAMKTSTDSGHVDESFNELDEPDEEDNKQ---- 780
            :|                |:....|      |.:...|..||:.::||:..|....|.||.    
 Frog   689 SEDSKPTKISNGTVANGTCSPDSGH------PSSRNFSITSGYSEQSFSTDDNASLETNKNSLYL 747

  Fly   781 ---------KQQQDEKISESESKLPDYRKLEEQINQEPSCSASTASSYETVGPGEVHQRPNSDTR 836
                     |:|....|...|:|..:...:::.::.|.:.:.|.                 .|..
 Frog   748 HMKQGTAEVKKQATSDIILPENKTAEVLPIQDSLDGEVTANESL-----------------DDFL 795

  Fly   837 SVLSPEYLSADDLQLPDDEDAVRPPPPPAAAAVIITKASVDITNWERSPKAAEGDQMSPLEEQAG 901
            |:..    |.||| |||.|.||               .|| :..|..|  .||.:.:...|:...
 Frog   796 SITE----STDDL-LPDKETAV---------------LSV-VETWPDS--EAEKESLVGSEDNLS 837

  Fly   902 ESGGAGVNMDALQQPK---------SAC-ASPASSNGGVYSSELLEQFGLNLHRIEKDVQRCDRN 956
            |.    ..|::| .|:         :.| .||.||.|..||.|||:.:.:|||||||||||||||
 Frog   838 EE----PEMESL-YPQLDSLVVIDATVCEMSPVSSTGVTYSQELLDMYTINLHRIEKDVQRCDRN 897

  Fly   957 YWYFANENLDKLRNVISTYVWEHLDVGYMQGMCDLVAPLLVIFDDESLSYSCFCKLMERMIENFP 1021
            ||||...||:|||||:.:|||:|:::||:||||||:||||||.|||:.::|||.:||:||.:|||
 Frog   898 YWYFTPANLEKLRNVMCSYVWQHIEIGYVQGMCDLLAPLLVILDDEAKAFSCFTELMKRMNQNFP 962

  Fly  1022 SGGAMDMHFANMRSLIQILDSEMYDLMDSNGDYTHFYFCYRWFLLDFKRELVYDDVFATWEVIWA 1086
            .|||||.|||||||||||||||:::||..||||||||||||||||||||||||||||:.||.|||
 Frog   963 HGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFSVWETIWA 1027

  Fly  1087 AKHIASGHFVLFLALALLETYRDIILSNSMDFTDVIKFFNEMAERHNAQSVLQLARSLVLQLQMI 1151
            ||||:|.|||||:||||:|.||||||.|:|||||:||||||||||||.:.:|:||:.||.::|.:
 Frog  1028 AKHISSAHFVLFIALALVEVYRDIILENNMDFTDIIKFFNEMAERHNIKHILKLAQDLVYKVQTL 1092

  Fly  1152 IENK 1155
            ||||
 Frog  1093 IENK 1096

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbcNP_001285494.1 RUN 45..218 CDD:280855 64/172 (37%)
PH_RUTBC 292..466 CDD:275431 106/179 (59%)
TBC 923..1087 CDD:214540 120/163 (74%)
sgsm1NP_001106422.2 RUN 44..186 CDD:367169 63/170 (37%)
PH_RUTBC 254..424 CDD:275431 106/179 (59%)
TBC 872..1053 CDD:214540 136/180 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 299 1.000 Domainoid score I1424
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 958 1.000 Inparanoid score I332
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D171826at2759
OrthoFinder 1 1.000 - - FOG0002045
OrthoInspector 1 1.000 - - mtm9377
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1347
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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