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Protein Alignment Gss2 and Gss

DIOPT Version :9

Sequence 1:	NP_728118.2	Gene:	Gss2 / 318053	FlyBaseID:	FBgn0052495	Length:	562	Species:	Drosophila melanogaster
Sequence 2:	NP_037094.1	Gene:	Gss / 25458	RGDID:	2752	Length:	474	Species:	Rattus norvegicus

Alignment Length:	535	Identity:	201/535 - (37%)
Similarity:	278/535 - (51%)	Gaps:	77/535 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    20 EDELLEVTAKAKDYAIMHGAAMRS-KTAFSPDSLNFAPFVLVPSSFPRKEFEKAVALQPIINRLM 83
            |.:|.|:..:|.|.|:..|..:|| |...|.|.:.:|||.|.||..|....|:|.|:|...|.|:
  Rat    12 EKQLEELAQQAIDRALAEGVLLRSAKNPSSSDVVTYAPFTLFPSPVPSTLLEQAYAVQMDFNILV 76

  Fly    84 HNVAHDEEFITTTLAETIKVDEFTANLFNIYRKVLAHGFTQKTSLGMLRSDLMLESGCPELSPRA 148
            ..|:.:..|:..||:.|||.||:||.||:||::||..|..|...||:.|||.|.:
  Rat    77 DAVSQNSAFLEQTLSSTIKKDEYTARLFDIYKQVLKEGIAQTVFLGLNRSDYMFQ---------- 131

  Fly   149 LRTAAGEDRGQDAGAAVGQIAGANGAAGVGTAAGTGSKEEEHREVQLSRVTKEPERRATGAQSAY 213
                                           .:..|||
  Rat   132 -------------------------------CSADGSK--------------------------- 138

  Fly   214 CCWKQVEINTIASGFGHLGPASKTIQRFVLSELGHADKLHNMPDNNALAGLCDGMVKAWDIYAKP 278
             ..||:|||||::.||.|...:..:.|.||:.|...::...:..||...||..|:.|||::|...
  Rat   139 -ALKQIEINTISASFGGLASRTPAVHRHVLNVLNKTNEASKILSNNPSKGLALGIAKAWELYGSA 202

  Fly   279 QAVILFIIEDVSYNICDQRFHEFYIRETYPHIKVLRRTLTEVHREGKLGQSKELLLGSQEVAVIY 343
            .||:|.|.::...||.|||..|..:.:...|  |:||...:|...|.|.|::.|.:..|||||:|
  Rat   203 NAVVLLIAQEKERNIFDQRAIENELLDRKIH--VIRRRFEDVSERGSLDQNRRLFMEDQEVAVVY 265

  Fly   344 FRAGYEPGHYHSQADWDARYLMETSLAIKCPSIHYHLAGTKKVQQALAQPAVLERFI-NDPEEIK 407
            ||.||.|..|::| :|:||.|:|.|.|.|||.|...|||||||||.|::..:||..: ..||.:.
  Rat   266 FRDGYMPSQYNAQ-NWEARLLLERSCAAKCPDIATQLAGTKKVQQELSRVGLLEALLPGQPEAVA 329

  Fly   408 AVGKIFTGLYSLDDNEAGNASYEMALRTPERFVLKPQREGGGNNVYGVDIPDALKRM-SRVERSA 471
            .:...|.||||||..|.|:.:...||..|..|||||||||||||.||.::..||::: ...||::
  Rat   330 RLRATFAGLYSLDMGEEGDQAVAEALAAPSHFVLKPQREGGGNNFYGEEMVHALEQLKDSEERAS 394

  Fly   472 WILMDLIHPPLTKGYMVRPGGDMPPQIVDMVSELGIFGVVIGDAEHIVHNYQAGHMLRTKLSTAN 536
            :|||:.|.|...:..::|||.  |.|:|..:||||||||.:.....:|.|...||:||||.....
  Rat   395 YILMEKIEPEPFRNCLLRPGS--PAQVVQCISELGIFGVYVRQGTTLVMNKHVGHLLRTKAIEHA 457

  Fly   537 EGGVAAGLGALDSPY 551
            :||||||:..||:||
  Rat   458 DGGVAAGVAVLDNPY 472

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.