DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH3 and Car15

DIOPT Version :9

Sequence 1:NP_001259349.1 Gene:CAH3 / 31804 FlyBaseID:FBgn0030056 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_085035.1 Gene:Car15 / 80733 MGIID:1931324 Length:324 Species:Mus musculus


Alignment Length:247 Identity:71/247 - (28%)
Similarity:113/247 - (45%) Gaps:28/247 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PVQSPIEISNRAIEHIDDVDPLEYHGH-------WEPVGVARVQNTGTSAMVTFSKRKQQ-PYII 58
            |.||||.|..|.::....:.|..:.|:       |.      ::|.|.:.::..:..:|. |.|.
Mouse    49 PTQSPINIDLRLVQRDYTLKPFIFQGYDSAPQDPWV------LENDGHTVLLRVNSCQQNCPAIR 107

  Fly    59 GGALEQDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNSKYKDFTEAKNKPDGLAVVA 123
            |..|....|...||||||......|.||:|:....|||.|.||.|:||:...:|:::|||.|::|
Mouse   108 GAGLPSPEYRLLQLHFHWGSPGHQGSEHSLDEKHGSMEMHMVHMNTKYQSMEDARSQPDGFAILA 172

  Fly   124 FFIQACGEKDCPEFKKITEGIRIVQKIHTSASLDSDCLSWIGLQELSK------HYYTYKGSLTT 182
            ..:.. .::|...|..|..|::.:.....:.:|.|.    ..|..|..      .||.|.|||||
Mouse   173 VLLVE-EDRDNTNFSAIVSGLKNLSSPGVAVNLTST----FALASLLPSALRLLRYYRYSGSLTT 232

  Fly   183 APYFESVTWIIYRTPIYVSRGQVQVFRN-LQSCPKD-ESKKIVNNYREIQRP 232
            .....:|.|.::...:.:...||..|:. ||:.|.. ..:.:.:|:|. |:|
Mouse   233 PGCEPAVLWTVFENTVPIGHAQVVQFQAVLQTGPPGLHPRPLTSNFRP-QQP 283

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH3NP_001259349.1 alpha_CA 4..233 CDD:238200 70/245 (29%)
Car15NP_085035.1 alpha_CA_IV_XV_like 48..291 CDD:239391 71/247 (29%)