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Protein Alignment CAH3 and Car5b

DIOPT Version :9

Sequence 1:	NP_001259349.1	Gene:	CAH3 / 31804	FlyBaseID:	FBgn0030056	Length:	250	Species:	Drosophila melanogaster
Sequence 2:	NP_851832.2	Gene:	Car5b / 56078	MGIID:	1926249	Length:	317	Species:	Mus musculus

Alignment Length:	232	Identity:	80/232 - (34%)
Similarity:	119/232 - (51%)	Gaps:	15/232 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSKRKQQPYIIGGALEQDMYV 68
            ||||.|..|...:...:.||..  .::|.....:.|.|.|.:|.|.....:..:.||.||.: |.
Mouse    64 QSPINIRWRDSVYDPGLKPLTI--SYDPATCLHIWNNGYSFLVEFEDSTDKSVVEGGPLEHN-YR 125

  Fly    69 FEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNS-KYKDFTEAKNKPDGLAVVAFFIQACGEK 132
            .:|.||||...|..|.|||::...|..|.|.||:|: |::.|.:|..:.:||||:..|::.  .|
Mouse   126 LKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEENGLAVIGVFLKL--GK 188

  Fly   133 DCPEFKKITEGIRIVQKIHT---SASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIY 194
            ...|.:|:.:.:..::...|   ..|.|..|     |......|:||.|||||.|..|||||||.
Mouse   189 HHKELQKLVDTLPSIKHKDTLVEFGSFDPSC-----LMPTCPDYWTYSGSLTTPPLSESVTWIIK 248

  Fly   195 RTPIYVSRGQVQVFRNLQSCPKDE-SKKIVNNYREIQ 230
            :.|:.|.|.|::.||.|....:.| .|::|:|:|.:|
Mouse   249 KQPVEVDRDQLEQFRTLLFTSEGEKEKRMVDNFRPLQ 285

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.