DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH3 and ca12

DIOPT Version :9

Sequence 1:NP_001259349.1 Gene:CAH3 / 31804 FlyBaseID:FBgn0030056 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001016431.1 Gene:ca12 / 549185 XenbaseID:XB-GENE-1015246 Length:335 Species:Xenopus tropicalis


Alignment Length:244 Identity:78/244 - (31%)
Similarity:125/244 - (51%) Gaps:30/244 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGH-WEPVGVARVQNTGTS---AMVTFSKRKQQPYIIGGALEQ 64
            ||||:|....:::...:.|::.:|: ..|.....:.|.|.:   ::|...:.|..|:        
 Frog    46 QSPIDIHQDILQYDSSLQPVKLNGYNVSPAESFTLSNNGHTVQMSLVPTMQIKIAPF-------- 102

  Fly    65 DMYVFEQLHFHWSD-CDESGCEHTLEGMKYSMEAHAVHYNS-KYKDFTEAKNKPDGLAVVAFFIQ 127
             .|...|||.||.. ..:.|.||.:||.:::.|.|.|:||| ||.|.|.|..:.|||||:...::
 Frog   103 -HYTASQLHLHWGQRGTQKGSEHCIEGKRFAGEVHLVNYNSDKYSDITTAMKESDGLAVLGILLE 166

  Fly   128 ACGEKDCPEFKKITEGIRIVQKIHTSASLDSDC-LSWIGLQEL----SKHYYTYKGSLTTAPYFE 187
            . |..: |.|:|      |:.::|:....|... ::...:|||    ...||.|:|||||.|.:.
 Frog   167 V-GPFN-PTFEK------IISQLHSIGYKDQSVQIAGFNVQELLPKRLDEYYRYEGSLTTPPCYP 223

  Fly   188 SVTWIIYRTPIYVSRGQVQVFRN-LQSCPKDESKKIVNNYREIQRPHKD 235
            ||.|.::|.|:.:|..|:..... |.|..::||.::.||||::| ||.|
 Frog   224 SVLWTVFRNPVTISEEQLITLETALYSTDRNESVQMTNNYRQLQ-PHGD 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAH3NP_001259349.1 alpha_CA 4..233 CDD:238200 75/240 (31%)
ca12NP_001016431.1 alpha_CA_XII_XIV 30..278 CDD:239400 78/244 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 1 1.000 - - FOG0000047
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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