back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CAH3 and Ca3

DIOPT Version :9

Sequence 1:	NP_001259349.1	Gene:	CAH3 / 31804	FlyBaseID:	FBgn0030056	Length:	250	Species:	Drosophila melanogaster
Sequence 2:	NP_062165.2	Gene:	Ca3 / 54232	RGDID:	2241	Length:	260	Species:	Rattus norvegicus

Alignment Length:	234	Identity:	77/234 - (32%)
Similarity:	115/234 - (49%)	Gaps:	20/234 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSKRKQQPYIIGGALEQDMYV 68
            |||||:..:.|.|...:.|  :...::|.....:.|.|.:..|.|.....:..:.||.| ...|.
  Rat    28 QSPIELHTKDIRHDPSLQP--WSVSYDPGSAKTILNNGKTCRVVFDDTFDRSMLRGGPL-SGPYR 89

  Fly    69 FEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKD 133
            ..|.|.||...|:.|.|||::|:||:.|.|.||:|.||..|.||..:|||:|||..|::...||.
  Rat    90 LRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKG 154

  Fly   134 CPEFKKITEGIRIVQKIHTSAS------LDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWI 192
              ||:.:.:.:   .||.|...      .|..||.     ...:.|:||.||.||.|..|.:.|:
  Rat   155 --EFQILLDAL---DKIKTKGKEAPFNHFDPSCLF-----PACRDYWTYHGSFTTPPCEECIVWL 209

  Fly   193 IYRTPIYVSRGQVQVFRNLQSCPKDESK-KIVNNYREIQ 230
            :.:.|:.||..|:...|:|.:..::|.. .:|.|:|..|
  Rat   210 LLKEPMTVSSDQMAKLRSLFASAENEPPVPLVGNWRPPQ 248

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.