DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH3 and Car2

DIOPT Version :9

Sequence 1:NP_001259349.1 Gene:CAH3 / 31804 FlyBaseID:FBgn0030056 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_062164.1 Gene:Car2 / 54231 RGDID:2240 Length:260 Species:Rattus norvegicus


Alignment Length:240 Identity:86/240 - (35%)
Similarity:122/240 - (50%) Gaps:17/240 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSKRKQQPYIIGGALEQDMYV 68
            |||::|.....:|...:.||..  .::.|....:.|.|.|..|.|...:....:..|.| ...|.
  Rat    28 QSPVDIDTGTAQHDPSLQPLLI--CYDKVASKSIVNNGHSFNVEFDDSQDFAVLKEGPL-SGSYR 89

  Fly    69 FEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKD 133
            ..|.||||...|..|.|||:...||:.|.|.||:|:||.||.:|...||||||:..|:     |.
  Rat    90 LIQFHFHWGSSDGQGSEHTVNKKKYAAELHLVHWNTKYGDFGKAVQHPDGLAVLGIFL-----KI 149

  Fly   134 CPE---FKKITEGIRIVQ-KIHTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIY 194
            .|.   .:||||.:..:: |...:|..:.|..|   |...:..|:||.|||||.|..|.||||:.
  Rat   150 GPASQGLQKITEALHSIKTKGKRAAFANFDPCS---LLPGNLDYWTYPGSLTTPPLLECVTWIVL 211

  Fly   195 RTPIYVSRGQVQVFRNLQSCPKDESKKI-VNNYREIQRPHKDPEI 238
            :.||.||..|:..||.|....:.|:::: |:|:|..| |.|:.:|
  Rat   212 KEPITVSSEQMSHFRKLNFNSEGEAEELMVDNWRPAQ-PLKNRKI 255

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH3NP_001259349.1 alpha_CA 4..233 CDD:238200 83/233 (36%)
Car2NP_062164.1 alpha_CA 1..259 CDD:294017 86/240 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..39 4/10 (40%)