Protein Alignment CAH3 and Ca4

DIOPT Version :10

• Sequence 1: NP_572497.1
• Gene: CAH3 / 31804
• FlyBaseID: FBgn0030056
• Length: 250
• Species: Drosophila melanogaster
• Sequence 2: NP_062047.1
• Gene: Ca4 / 29242
• RGDID: 2242
• Length: 309
• Species: Rattus norvegicus
• Alignment Length: 243
• Identity: 68/243 - (27%)
• Similarity: 114/243 - (46%)
• Gaps: 20/243 - (8%)

  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGH-----WEPVGVARVQNTGTSAMVTFSKRKQQPYIIGGALE 63
            ||||.|.....:....:.|..:.|:     ||      |:|...|..::..   :..||.||.|
  Rat    50 QSPINIVTSKTKLNPSLTPFTFVGYDQKKKWE------VKNNQHSVEMSLG---EDIYIFGGDL- 104

  Fly    64 QDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNSKYKDFTEAKNKPDGLAVVAFFIQA 128
            ...|...|||.|||:....|.||:::|..::||.|.||......|..:..:..|.:||:||.::.
  Rat   105 PTQYKAIQLHLHWSEESNKGSEHSIDGKHFAMEMHVVHKKMTTGDKVQDSDSKDKIAVLAFMVEV 169

  Fly   129 CGEKDCPEFKKITEGIRIVQKIHTSASLDSDCLSWIGLQELSK--HYYTYKGSLTTAPYFESVTW 191
             |.:....|:.:.|.:..:.|..|::::...||..: |.|..|  .|:.|:|||||....|:|.|
  Rat   170 -GNEVNEGFQPLVEALSRLSKPFTNSTVSESCLQDM-LPEKKKLSAYFRYQGSLTTPGCDETVIW 232

  Fly   192 IIYRTPIYVSRGQVQVFRNLQSCPKDESKKIVNNYREIQRPHKDPEIF 239
            .::..||.:.:.|...|.......:::...:.:|.|.:| |..:.::|
  Rat   233 TVFEEPIKIHKDQFLEFSKKLYYDQEQKLNMKDNVRPLQ-PLGNRQVF 279

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CAH3	NP_572497.1	alpha_CA	4..233	CDD:238200	66/235 (28%)
Ca4	NP_062047.1	alpha_CA_IV_XV_like	47..280	CDD:239391	68/243 (28%)