DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH3 and Car6

DIOPT Version :9

Sequence 1:NP_001259349.1 Gene:CAH3 / 31804 FlyBaseID:FBgn0030056 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_033932.2 Gene:Car6 / 12353 MGIID:1333786 Length:317 Species:Mus musculus


Alignment Length:229 Identity:64/229 - (27%)
Similarity:108/229 - (47%) Gaps:10/229 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSKRKQQPYIIGGALEQDMYV 68
            ||||::....:.....:.||....:.:......:.|.|.:..:..     .|.:.....:...::
Mouse    46 QSPIDVKTEEVMFNPSLKPLSLVNYEKENLEFTMTNNGHTVSIDL-----PPSMYLETSDGTEFI 105

  Fly    69 FEQLHFHWS--DCDESGCEHTLEGMKYSMEAHAVHYNSKYKDFTEAKNKPDGLAVVAFFIQACGE 131
            .:..||||.  |.:.||.|||::|::..||||.||:|.:|..:..||::.:||||:|...:....
Mouse   106 SKAFHFHWGGRDWELSGSEHTIDGIRSIMEAHFVHFNKEYGTYENAKDQKNGLAVLAVLFKIDEY 170

  Fly   132 KDCPEFKKITEGIRIVQKIHTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIYRT 196
            .:...:..|...::.::|...:.:|....:..: |.:...|||||.|||||.|..|:|.|.:.|.
Mouse   171 AENTYYSDIISALKNIEKPGETTTLKDTTIRNL-LPKDVHHYYTYPGSLTTPPCTENVQWFVLRD 234

  Fly   197 PIYVSRGQVQVFRNLQSCPKDESKKIVNNYREIQ 230
            .:.:|:.||....|  |.....:..|.|.||..|
Mouse   235 KVTLSKAQVVTIEN--SVMDHNNNTIQNGYRSTQ 266

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH3NP_001259349.1 alpha_CA 4..233 CDD:238200 64/229 (28%)
Car6NP_033932.2 alpha_CA_VI 30..278 CDD:239399 64/229 (28%)