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Protein Alignment CAH3 and Car3

DIOPT Version :9

Sequence 1:	NP_001259349.1	Gene:	CAH3 / 31804	FlyBaseID:	FBgn0030056	Length:	250	Species:	Drosophila melanogaster
Sequence 2:	NP_031632.2	Gene:	Car3 / 12350	MGIID:	88270	Length:	260	Species:	Mus musculus

Alignment Length:	234	Identity:	78/234 - (33%)
Similarity:	116/234 - (49%)	Gaps:	20/234 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSKRKQQPYIIGGALEQDMYV 68
            |||||:..:.|:|...:.|  :...::|.....:.|.|.:..|.|.....:..:.||.| ...|.
Mouse    28 QSPIELHTKDIKHDPSLQP--WSASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPL-SGPYR 89

  Fly    69 FEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKD 133
            ..|.|.||...|:.|.|||::|:||:.|.|.||:|.||..|.||..:|||:|||..|::...||.
Mouse    90 LRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKG 154

  Fly   134 CPEFKKITEGIRIVQKIHTSAS------LDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWI 192
              ||:.:.:.:   .||.|...      .|..||.     ...:.|:||.||.||.|..|.:.|:
Mouse   155 --EFQILLDAL---DKIKTKGKEAPFTHFDPSCLF-----PACRDYWTYHGSFTTPPCEECIVWL 209

  Fly   193 IYRTPIYVSRGQVQVFRNLQSCPKDESK-KIVNNYREIQ 230
            :.:.|:.||..|:...|:|.|..::|.. .:|.|:|..|
Mouse   210 LLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQ 248

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.