DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAH3 and Car1

DIOPT Version :9

Sequence 1:NP_001259349.1 Gene:CAH3 / 31804 FlyBaseID:FBgn0030056 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001077426.1 Gene:Car1 / 12346 MGIID:88268 Length:261 Species:Mus musculus


Alignment Length:232 Identity:79/232 - (34%)
Similarity:115/232 - (49%) Gaps:15/232 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSKRKQQPYIIGGALEQDMYV 68
            ||||:|......|...:.||..  .:.|.....:.|.|.|..|.|.....|..:.||.| .|.|.
Mouse    29 QSPIDIKTSEANHDSSLKPLSI--SYNPATAKEIVNVGHSFHVIFDDSSNQSVLKGGPL-ADSYR 90

  Fly    69 FEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNS-KYKDFTEAKNKPDGLAVVAFFIQACGEK 132
            ..|.||||.:.::.|.|||::|.:||.|.|.||:|| ||...:||.:|.||||::...::. |..
Mouse    91 LTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHWNSAKYSSASEAISKADGLAILGVLMKV-GPA 154

  Fly   133 DCPEFKKITEGIRIVQ---KIHTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIY 194
            : |..:|:.:.:..|:   |.....:.|..     .|...|..|:||.||||..|..|||||:|.
Mouse   155 N-PSLQKVLDALNSVKTKGKRAPFTNFDPS-----SLLPSSLDYWTYFGSLTHPPLHESVTWVIC 213

  Fly   195 RTPIYVSRGQVQVFRNLQSCPKDE-SKKIVNNYREIQ 230
            :..|.:|..|:...|.|.|..:.| :..:::|:|..|
Mouse   214 KDSISLSPEQLAQLRGLLSSAEGEPAVPVLSNHRPPQ 250

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CAH3NP_001259349.1 alpha_CA 4..233 CDD:238200 79/232 (34%)
Car1NP_001077426.1 alpha_CA 2..261 CDD:381753 79/232 (34%)