DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAH3 and ca11

DIOPT Version :9

Sequence 1:NP_001259349.1 Gene:CAH3 / 31804 FlyBaseID:FBgn0030056 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_002938168.2 Gene:ca11 / 100493884 XenbaseID:XB-GENE-6037596 Length:330 Species:Xenopus tropicalis


Alignment Length:253 Identity:63/253 - (24%)
Similarity:106/253 - (41%) Gaps:54/253 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAM---------VTFSKRKQQPYIIG 59
            ||||.|:...|.....:.||            |:..|||:..         |:|...|:||..|.
 Frog    67 QSPININTSQIIFDPFLPPL------------RLSMTGTTVSGTMHNTGRHVSFRLDKEQPVNIS 119

  Fly    60 GALEQDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAVHYNSK-YKDFTEAKNKPDGLAVVA 123
            |......:..|::..|:...:..|.||.:.....:.|...:|||.. |.:.|||...|:||||::
 Frog   120 GGPLLYNHRLEEVMLHFGSENSIGSEHLMNKETSAGEVQLIHYNQDLYSNVTEASRNPNGLAVIS 184

  Fly   124 FFIQACGEKDCPEFKKITEGIRIVQKIHTSASLDSDCLSWIG-------LQELSKH--------Y 173
            .|:......:.                ..:..|:.:.::.|.       :|:||..        :
 Frog   185 LFLNVADNSNS----------------FLNRMLNRETITRISFRNEATYIQDLSIEDLYPDTFGF 233

  Fly   174 YTYKGSLTTAPYFESVTWIIYRTPIYVSRGQVQVFRNL-QSCPKDESKKIVNNYREIQ 230
            .||:||:|..|.:|:||||:...|:.::..|:...|.| |:.|....:.:.:|:|.:|
 Frog   234 LTYQGSMTIPPCYETVTWIVIDRPLNITSMQMHSLRLLSQNQPSQIFQSMSDNFRPVQ 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAH3NP_001259349.1 alpha_CA 4..233 CDD:238200 63/253 (25%)
ca11XP_002938168.2 alpha_CARP_X_XI_like 47..303 CDD:239395 63/253 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.