DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rubicon and DEF8

DIOPT Version :10

Sequence 1:NP_572496.1 Gene:Rubicon / 31803 FlyBaseID:FBgn0030055 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_648549.1 Gene:DEF8 / 39381 FlyBaseID:FBgn0046296 Length:492 Species:Drosophila melanogaster


Alignment Length:248 Identity:73/248 - (29%)
Similarity:123/248 - (49%) Gaps:16/248 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   586 EHP-SESRSKV-LQKQNHRCAGCG-MRVAKHLQQHFRYCTYLGKYLCTGCHRNQISAIPARILRS 647
            :|| ||...:: |..|.::||.|| |...|:.....|.|.|.|.|.|..|:.|..:.|||||:.:
  Fly   223 QHPISEICPEIGLASQGYKCAECGTMLNIKNTWIEPRLCDYSGLYYCPRCNWNDSNFIPARIIHN 287

  Fly   648 WDFRCYPVCSFAYRLIEQMYAFPLFHVPDLNSQLYKHKE-LAKARKRRLQLQAVKGFIANCRFAT 711
            |||....|...|.:.|......||..:.:.|.:|:...| |...:|.|..|..::.::|.|:.|:
  Fly   288 WDFSPRRVSRTALQEIRLFLNKPLIRLEEDNPKLFVFVEKLCAVKKLRQNLVHMRHYLAACKIAS 352

  Fly   712 R----EQSFFNAIPAHITQDPDMWSMCDFVDVQNTSMNRSIKEVIALSEQHVHNCVLCTGRAFVC 772
            .    :|..  .:..|:.|..:.:|:.|...|::.:::..::.|......|:.:|.:|..:|::|
  Fly   353 ELKLVDQQL--GVRRHLAQSNEFYSLSDLSQVESGALSEFLQGVFKAFNDHIRSCPMCLAQAYIC 415

  Fly   773 EHCKGGELIYPWQRKVQRCDRCGACFHNGCWKVRSRCRNQNDPCPRCSRLQSR 825
            |.|...|:|:|:.....:||:|.:.||..|      ...:|..||:|.|:|.|
  Fly   416 EICSNNEVIFPFDDGCIKCDQCNSIFHRVC------LTRKNMICPKCIRIQER 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RubiconNP_572496.1 RUN_RUBCN 50..207 CDD:439048
zf-RING_9 619..824 CDD:464030 59/209 (28%)
DEF8NP_648549.1 C1_DEF8 <173..219 CDD:410369
zf-RING_9 259..461 CDD:464030 59/209 (28%)
Blue background indicates that the domain is not in the aligned region.

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