DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42272 and prpf39

DIOPT Version :10

Sequence 1:NP_729101.2 Gene:CG42272 / 318020 FlyBaseID:FBgn0259167 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001004520.1 Gene:prpf39 / 368864 ZFINID:ZDB-GENE-030616-420 Length:752 Species:Danio rerio


Alignment Length:345 Identity:76/345 - (22%)
Similarity:122/345 - (35%) Gaps:102/345 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 TFIDNTSSNASRNDHMVQNNENPASFEQQTLQLQQQQQQATVQYA----HISPLDKEVVERLIKQ 137
            |.:.|...:||..:...:|:|.|.  |....|..|.:|...|:.|    ..||.:.|:.:...:.
Zfish    69 TAVQNIDQSASPAEPAAENSEQPP--ESNGQQEDQSEQPDDVKEAGQGDSESPSNMELEDAPKEP 131

  Fly   138 WAPIVW---LAPEEKFMPLGVEEFLQYVHPMDKDSSFRPGVPFREYSTKSHLVTNNEVQELLGND 199
            ..|...   .||:|..:|...|...:.|.  |....|...|...:|..:.:        .|||:.
Zfish   132 AEPAAEADPAAPQEPELPTEYERLSKVVE--DNPEDFNGWVYLLQYVEQEN--------HLLGSR 186

  Fly   200 KSF---------LYGRNPNEKAVPI---YGVVNLCPSTRAPAMPVVPTTPPTTTRGVY-IPVSID 251
            |:|         .||.  .:|...|   :|.:.:...              ...||:. ||:|:|
Zfish   187 KAFDAFFLHYPYCYGY--WKKYADIERKHGYIQMADE--------------VYRRGLQAIPLSVD 235

  Fly   252 P-------LEERNDT--------IR--------------RSSRLFPLFQRVKRESPTVPQYNQLN 287
            .       |.|..||        ||              ||.||:..:...:.|...:.....: 
Zfish   236 LWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAI- 299

  Fly   288 EYEELVMEATQ---------KPSVQQDSEPEPENGVPVNNFIA---NLADNVKFSGGTYPDDNLE 340
             |:.|:...||         |..||.::   |::.:....|::   .||:..|.||        :
Zfish   300 -YDRLLCIPTQLYSQHFQKFKDHVQSNN---PKHFLSEEEFVSLRVELANANKPSG--------D 352

  Fly   341 ENSIGQAPEKEEGPGKGKLP 360
            |::..:||.:|..||...||
Zfish   353 EDAETEAPGEELPPGTEDLP 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42272NP_729101.2 Vps62 <367..>437 CDD:461828
prpf39NP_001004520.1 TPR repeat 530..557 CDD:276809
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 678..703
HAT 6 700..731
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..148 20/80 (25%)
RNA14 148..>495 CDD:227438 56/264 (21%)
HAT 1 180..212 9/41 (22%)
HAT 2 214..246 8/45 (18%)
HAT 3 254..289 6/34 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 347..374 11/34 (32%)
LapB <408..598 CDD:442196
HAT 4 408..440
HAT 5 442..474
TPR repeat 495..524 CDD:276809
Blue background indicates that the domain is not in the aligned region.

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