Protein Alignment oc and Crx

DIOPT Version :10

• Sequence 1: NP_001356934.1
• Gene: oc / 31802
• FlyBaseID: FBgn0004102
• Length: 664
• Species: Drosophila melanogaster
• Sequence 2: NP_068627.2
• Gene: Crx / 60446
• RGDID: 620511
• Length: 299
• Species: Rattus norvegicus
• Alignment Length: 230
• Identity: 91/230 - (39%)
• Similarity: 122/230 - (53%)
• Gaps: 27/230 - (11%)

  Fly    17 SYGGPHPHHSVPHGPLPPGMPMPSLGP-FGLPHGLEAVGFSQGMWGVNTRKQRRERTTFTRAQLD 80
            :|..|.||:||        ..:...|| ..|.|  :||.:|..     .||||||||||||:||:
  Rat     3 TYMNPGPHYSV--------NALALSGPSVDLMH--QAVPYSSA-----PRKQRRERTTFTRSQLE 52

  Fly    81 VLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQQSN-------SLSSS 138
            .|||||.||:|||::.|||||||||||||||||||||||||||||.|||:|..       ....:
  Rat    53 ELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGVQAKARPA 117

  Fly   139 KNASGGG---SGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQQGGGSS 200
            |..:|..   |.:.|:.....|.|.|.:....|.:.| ::....|..|...:.....:|:.|..:
  Rat   118 KRKAGTSPRPSTDVCTDPLGISDSYSPSLPGPSGSPT-TAVATVSIWSPASESPLPEAQRAGLVA 181

  Fly   201 GGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLS 235
            .|::..:...|...:.|:|..::.|.....||:.|
  Rat   182 SGSSLTSAPYAMTYAPASAFCSSPSAYASPSSYFS 216

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
oc	NP_001356934.1	Homeodomain	68..123	CDD:459649	46/54 (85%)
Crx	NP_068627.2	Homeodomain	40..93	CDD:459649	44/52 (85%)
		TF_Otx	164..249	CDD:427350	11/53 (21%)