DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and pax3

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:XP_012825755.1 Gene:pax3 / 448464 XenbaseID:XB-GENE-482740 Length:486 Species:Xenopus tropicalis


Alignment Length:258 Identity:73/258 - (28%)
Similarity:102/258 - (39%) Gaps:70/258 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 RKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ---- 125
            |||||.|||||..||:.||..|.:|.||||:.|||:|.:..|.|:||||||.||||:.|:|    
 Frog   219 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGAN 283

  Fly   126 -----------------------LQQQQQSNSLSSSKNASGGGSG----------NSCSSSSANS 157
                                   .|..:.|...:|...|....|.          :|...||..|
 Frog   284 QLMAFNHLIPGAFPPAAMPALPTYQLSETSYQPTSIPQAVSDPSNTVHRPQPLPPSSVHQSSLPS 348

  Fly   158 RSNSNN--------NGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQQGG--GSSGG--NNSNNNSA 210
            ...|::        :|.||..::.......||..:...||..|.|..|  .:.||  :....:.|
 Frog   349 NPESSSAYCLPSGRHGFSSYTDSFVPPSGPSNPMNPAIGNGLSPQVMGLLTNHGGVPHQPQTDYA 413

  Fly   211 AAAASAA----AAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNNNNQGNSTPNSSSSG 269
            .:..:..    .||:|:.|.:..|...|                 :|.:.:|....|..|:||
 Frog   414 LSPLTGGLEPPTAVSASCSQRLEHMKSL-----------------DSLSTSQSYCPPTYSTSG 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 33/54 (61%)
pax3XP_012825755.1 PAX 35..162 CDD:238076
Homeodomain 222..278 CDD:459649 33/55 (60%)
Pax7 349..393 CDD:403540 9/43 (21%)
Blue background indicates that the domain is not in the aligned region.

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