DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment oc and sv

DIOPT Version :9

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster


Alignment Length:616 Identity:126/616 - (20%)
Similarity:207/616 - (33%) Gaps:195/616 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 DIFMREEVALKINLPE-SRVQVWFKNRRAKCRQQLQQQQQ---SNSL------SSSKNASGGGSG 147
            |..:.|.:..:.|:|. |.:....:|:.|:..:.:...||   |.||      :.|.::|.|..|
  Fly   275 DRLLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIG 339

  Fly   148 N---SCSSSSANSRSNSNNNGSSS---------NNNTQSSGGN-NSNKSSQKQGNSQSSQQGGGS 199
            .   ..|:||||| .|:|.:.|:|         .::.|.|.|: |:|.:.....||.:.|:..|.
  Fly   340 EPQPPTSNSSANS-VNTNVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGY 403

  Fly   200 S-----------GGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNS 253
            |           ..:|:||||:....:...:....:.|:.|..              |...|.:|
  Fly   404 SINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDE--------------NHDTNIHS 454

  Fly   254 NNNNQGNSTPNSSSSG--------GGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTPAT--- 307
            :|:: |.....|:.||        .|.......|...|...   |:||:..|      .|||   
  Fly   455 DNDD-GKRQRMSTYSGDQLYTNIWSGKWCIKDDHKLLAELG---NLTASTGN------CPATYYE 509

  Fly   308 -----SVSPVSIVCKKEHLSGGYGSSVGGGGGGGGASSGGLNLGV------------------GV 349
                 |.:|:|                     |.||::.|.:..:                  .:
  Fly   510 ASNGFSTTPIS---------------------GSGATASGNDTSMLYDSITTISQTQSSIYTPAI 553

  Fly   350 GVGVGVG-----VGVSQDLLRSPYDQLKDAGGDIGAGVHHHHSIYGSAAGSNPRLLQP------- 402
            |..:|.|     |.:|.                        |.:..||.....:.:.|       
  Fly   554 GPSIGTGSLTPLVPISM------------------------HEMKLSANSIQEQTVPPFYTALAF 594

  Fly   403 GGNITPM---DSSSSITTPSPPITPMSPQSAAAAAHAAQSAQS-AHHSAAHSAAYMSNHDSYNFW 463
            .||.|.|   ::.||:......:.|.|..|......:.:.... ...::......::|.|..:..
  Fly   595 DGNYTSMTSLENCSSLVGQEHIVMPESSDSNTLCPISTRIVPDITETNSTRVKEPLTNSDGCSED 659

  Fly   464 HNQYQQYPNNYAQAPSYYSQMEYFSNQNQVNYNMGHSGYTASNFGLSPSPSFTGTVSAQAFSQNS 528
            :|:..:..|:...:....|...:...:.|:.      |...||...|..||  ..:..|....:|
  Fly   660 NNKEPEKSNSSQSSDHIASPHLHHIGEEQLR------GNRRSNLNASTHPS--SLIPLQPSGGSS 716

  Fly   529 LDYMSPQDKYANMVXNLLFQYCSGGSN--------------NNSSAGASGSGSGSG-------SG 572
            |..::|.:..:::. ||        ||              |:.|||.|....||.       :.
  Fly   717 LLNINPSENRSDVELNL--------SNNVGLYSTPTVLPSFNHYSAGCSSVVPGSDYAYNPAYTQ 773

  Fly   573 SGSGSGS-GCGSGSGSGSGS---GSGSNSSP 599
            .|...|| |.|:|||..:.|   .||...||
  Fly   774 YGGAYGSYGYGTGSGLINSSYYYESGQTQSP 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeobox 71..123 CDD:333795 7/30 (23%)
svNP_524633.3 PAX 175..299 CDD:128645 5/23 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451036
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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