Protein Alignment oc and sv

DIOPT Version :10

• Sequence 1: NP_001356934.1
• Gene: oc / 31802
• FlyBaseID: FBgn0004102
• Length: 664
• Species: Drosophila melanogaster
• Sequence 2: NP_524633.3
• Gene: sv / 43825
• FlyBaseID: FBgn0005561
• Length: 844
• Species: Drosophila melanogaster
• Alignment Length: 616
• Identity: 126/616 - (20%)
• Similarity: 207/616 - (33%)
• Gaps: 195/616 - (31%)

  Fly    93 DIFMREEVALKINLPE-SRVQVWFKNRRAKCRQQLQQQQQ---SNSL------SSSKNASGGGSG 147
            |..:.|.:..:.|:|. |.:....:|:.|:..:.:...||   |.||      :.|.::|.|..|
  Fly   275 DRLLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIG 339

  Fly   148 N---SCSSSSANSRSNSNNNGSSS---------NNNTQSSGGN-NSNKSSQKQGNSQSSQQGGGS 199
            .   ..|:||||| .|:|.:.|:|         .::.|.|.|: |:|.:.....||.:.|:..|.
  Fly   340 EPQPPTSNSSANS-VNTNVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGY 403

  Fly   200 S-----------GGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNS 253
            |           ..:|:||||:....:...:....:.|:.|..              |...|.:|
  Fly   404 SINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDE--------------NHDTNIHS 454

  Fly   254 NNNNQGNSTPNSSSSG--------GGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTPAT--- 307
            :|:: |.....|:.||        .|.......|...|...   |:||:..|      .|||
  Fly   455 DNDD-GKRQRMSTYSGDQLYTNIWSGKWCIKDDHKLLAELG---NLTASTGN------CPATYYE 509

  Fly   308 -----SVSPVSIVCKKEHLSGGYGSSVGGGGGGGGASSGGLNLGV------------------GV 349
                 |.:|:|                     |.||::.|.:..:                  .:
  Fly   510 ASNGFSTTPIS---------------------GSGATASGNDTSMLYDSITTISQTQSSIYTPAI 553

  Fly   350 GVGVGVG-----VGVSQDLLRSPYDQLKDAGGDIGAGVHHHHSIYGSAAGSNPRLLQP------- 402
            |..:|.|     |.:|.                        |.:..||.....:.:.|
  Fly   554 GPSIGTGSLTPLVPISM------------------------HEMKLSANSIQEQTVPPFYTALAF 594

  Fly   403 GGNITPM---DSSSSITTPSPPITPMSPQSAAAAAHAAQSAQS-AHHSAAHSAAYMSNHDSYNFW 463
            .||.|.|   ::.||:......:.|.|..|......:.:.... ...::......::|.|..:..
  Fly   595 DGNYTSMTSLENCSSLVGQEHIVMPESSDSNTLCPISTRIVPDITETNSTRVKEPLTNSDGCSED 659

  Fly   464 HNQYQQYPNNYAQAPSYYSQMEYFSNQNQVNYNMGHSGYTASNFGLSPSPSFTGTVSAQAFSQNS 528
            :|:..:..|:...:....|...:...:.|:.      |...||...|..||  ..:..|....:|
  Fly   660 NNKEPEKSNSSQSSDHIASPHLHHIGEEQLR------GNRRSNLNASTHPS--SLIPLQPSGGSS 716

  Fly   529 LDYMSPQDKYANMVXNLLFQYCSGGSN--------------NNSSAGASGSGSGSG-------SG 572
            |..::|.:..:::. ||        ||              |:.|||.|....||.       :.
  Fly   717 LLNINPSENRSDVELNL--------SNNVGLYSTPTVLPSFNHYSAGCSSVVPGSDYAYNPAYTQ 773

  Fly   573 SGSGSGS-GCGSGSGSGSGS---GSGSNSSP 599
            .|...|| |.|:|||..:.|   .||...||
  Fly   774 YGGAYGSYGYGTGSGLINSSYYYESGQTQSP 804

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
oc	NP_001356934.1	Homeodomain	68..123	CDD:459649	7/30 (23%)
sv	NP_524633.3	PAX	175..299	CDD:128645	5/23 (22%)