Protein Alignment oc and ro

DIOPT Version :10

• Sequence 1: NP_001356934.1
• Gene: oc / 31802
• FlyBaseID: FBgn0004102
• Length: 664
• Species: Drosophila melanogaster
• Sequence 2: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Alignment Length: 222
• Identity: 59/222 - (26%)
• Similarity: 89/222 - (40%)
• Gaps: 36/222 - (16%)

  Fly    10 DLGPHPHSYGGPHPHH-----SVPHGPLPPGMPMPSLGPFG-----LPHGLEA-----VGFSQGM 59
            |...||......|.||     .:.|..|....|.|::...|     |||...|     ..||.|.
  Fly   113 DYPQHPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPAIAAGGAANPVLPHAFPAGFPSDPHFSAGF 177

  Fly    60 WGVNTR------KQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNR 118
            .....|      :|||:||||:..|...||..|.:..|.....|.|:|..:.|.|:::::||:||
  Fly   178 SAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNR 242

  Fly   119 RAKCRQ----QLQQQQQ----SNSLSSS-------KNASGGGSGNSCSSSSANSRSNSNNNGSSS 168
            |||.::    |:.|..:    :|...||       ....||.:|........|..:.:....:..
  Fly   243 RAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAAATPAALP 307

  Fly   169 NNNTQSSGGNNSNKSSQKQGNSQSSQQ 195
            .:|||.:...:.:...|:|...:..||
  Fly   308 KDNTQDANFIDIDDQFQRQQQQKQQQQ 334

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
oc	NP_001356934.1	Homeodomain	68..123	CDD:459649	23/54 (43%)
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	20/51 (39%)