Protein Alignment oc and abd-A

DIOPT Version :10

• Sequence 1: NP_001356934.1
• Gene: oc / 31802
• FlyBaseID: FBgn0004102
• Length: 664
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 603
• Identity: 128/603 - (21%)
• Similarity: 190/603 - (31%)
• Gaps: 250/603 - (41%)

  Fly   206 NNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNNNNQGNSTPNSSSSGG 270
            |::|||.||:.|||.|:|       |:.:||::::.:..:|..|.:|::|.|..:|:|:|||:..
  Fly    31 NSSSAAVAAALAAAAASA-------SASVSASSSSNNNSSNTIAGSNTSNTNNSSSSPSSSSNNN 88

  Fly   271 -----GGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTPATSVSPVS---IVCKKEHLSGGYGS 327
                 .|||.:..|||            .|...||  .:|.:|.||..   ...:::||:
  Fly    89 SNLNLSGGSLSPSHLS------------QHLGQSP--HSPVSSSSPFQQHHPQVQQQHLN----- 134

  Fly   328 SVGGGGGGGGASSGGLNLGVGVGVGVGVGVGVSQDLLRSPYDQLKDAGGDIGAGV------HHHH 386
                                          ...|..|.....|.......:.|.:      ||..
  Fly   135 ------------------------------HQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHIS 169

  Fly   387 SIYGSAAGSNPR-----LLQP--GGNITPMDSSSSITTPSP----------PITPMSPQSAAAAA 434
            .:..:|..|:..     ||.|  .||....|||.|   |||          .:...||.||:|:|
  Fly   170 KLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCS---PSPSASGSSSLHRSLNDNSPGSASASA 231

  Fly   435 HAAQSAQSAHHSAAHSAAYMSNHDSYNFWHNQYQQYPNNYAQAPSYYSQMEYFSNQNQVNYNMGH 499
            .|:.::..|..:||.:||..|     :|.....:.||              |.||
  Fly   232 SASAASSVAAAAAAAAAAASS-----SFAIPTSKMYP--------------YVSN---------- 267

  Fly   500 SGYTASNFGLSPSPSFTG--TVSAQAFS---QNSLDYMS-PQDKYANMVXNLLFQYCSGGSNNNS 558
              :.:|:.|||....|||  ..|...::   .||...|| |....|...   .:|:.:..::..|
  Fly   268 --HPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQ--FYQHATAAASAVS 328

  Fly   559 SAGASGSGSGSGSGSGSGSGSGCGSGSGSGSGSG----------------------------SGS 595
            :|.|...|..|...:.:...||...|:|...|:|                            :|.
  Fly   329 AASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGP 393

  Fly   596 NSSP--------------QLEQHHH---------------------------------------- 606
            |..|              :||:..|
  Fly   394 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 458

  Fly   607 -----------------------------------QQHQHQLQQHQHHQNHHQNQHQNHHGHH-- 634
                                               ||.|.|.||.|..|..||.|.|....||
  Fly   459 AVKEINEQARRDREEQEKMKAQETMKSAQQNKQVQQQQQQQQQQQQQQQQQHQQQQQQPQDHHSI 523

  Fly   635 --HHQQQHHHDDEQRQDI 650
              |:....||....:.|:
  Fly   524 IAHNPGHLHHSVVGQNDL 541

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
oc	NP_001356934.1	Homeodomain	68..123	CDD:459649
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	3/55 (5%)
		Abdominal-A	456..478	CDD:403567	0/21 (0%)