DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and mix1

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_988848.1 Gene:mix1 / 394439 XenbaseID:XB-GENE-485898 Length:357 Species:Xenopus tropicalis


Alignment Length:170 Identity:55/170 - (32%)
Similarity:78/170 - (45%) Gaps:45/170 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 PHGPLPPGMPMPSLGPFGLPHGLEAVGFSQGMWGVNTRKQRRERTTFTRAQLDVLEALFGKTRYP 92
            |..|:|....:|:                         .|||:||.||:||||:||..|....||
 Frog    73 PRNPVPDASLLPA-------------------------SQRRKRTFFTQAQLDILEQFFQTNMYP 112

  Fly    93 DIFMREEVALKINLPESRVQVWFKNRRAKCRQQ--------LQQQQQSNSLSSSKNA-SGGGSGN 148
            ||..|||:|..|.:||||:||||:|||||.|:|        |.....|::..::::. ....:.|
 Frog   113 DIHHREELARHIYIPESRIQVWFQNRRAKVRRQGAKATKPVLAGHHYSSTFGATRSMFPSAPAPN 177

  Fly   149 SCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQG 188
            |.|...|.:|:.:           |....:.:||..|.||
 Frog   178 SSSHPMATARAQA-----------QPMKDSQANKFHQSQG 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 35/54 (65%)
mix1NP_988848.1 Homeodomain 88..144 CDD:459649 35/55 (64%)

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