DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment oc and Rx

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster


Alignment Length:407 Identity:103/407 - (25%)
Similarity:146/407 - (35%) Gaps:133/407 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 RKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQ 129
            :|.||.|||||..||..||..|.|:.|||::.|||:|:|:||||.||||||:|||||.|    :|
  Fly   557 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR----RQ 617

  Fly   130 QQSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQ 194
            ::|.||                                                  :.|.:..:|
  Fly   618 EKSESL--------------------------------------------------RLGLTHFTQ 632

  Fly   195 ----QGGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNN 255
                .|.|:||.......|....::....::..|::   :.|:|:...:.|.|....|:.....:
  Fly   633 LPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTV---YPSYLTPPLSLAPGNLTMSSLAAMGH 694

  Fly   256 NNQGNSTPNSSSSGGGGG-------------------------SQAGGHLSAAAAAAALNVTAAH 295
            ::..|..|......||.|                         |....|||..:..|. ::.:.|
  Fly   695 HHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGSHHVVPLSHLSPHLSRMSPHAT-SLGSPH 758

  Fly   296 QNSSPLLPTPATSVSPVSIVCKKEHLSGGYGSSVGGGGGGGGASSGGL------------NLGVG 348
            ...:| |.||..|..|.|.......:|....||          ||..|            ||.:|
  Fly   759 HGVTP-LGTPLHSSLPPSSTATTVAVSSSQSSS----------SSASLECSGPDVCMSPQNLSIG 812

  Fly   349 VGVGVGVGVGVSQDLLRSPYDQLKDAGGDIGAGVHHHHSIYGSAAGSNPRLLQPGGNITPMDSSS 413
            .....|.|..:|.||         |||   ....:...|:...||.:|..||..|.:        
  Fly   813 NADSNGDGRDLSSDL---------DAG---STSSNPGSSLDKCAASANIELLDVGRD-------- 857

  Fly   414 SITTPSPPITPMSPQSA 430
               :|.||.||....|:
  Fly   858 ---SPPPPPTPTGKGSS 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 36/54 (67%)
RxNP_726006.3 Homeodomain 560..616 CDD:459649 37/59 (63%)
OAR 876..892 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.