Protein Alignment oc and lms

DIOPT Version :10

• Sequence 1: NP_001356934.1
• Gene: oc / 31802
• FlyBaseID: FBgn0004102
• Length: 664
• Species: Drosophila melanogaster
• Sequence 2: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 270
• Identity: 58/270 - (21%)
• Similarity: 113/270 - (41%)
• Gaps: 56/270 - (20%)

  Fly    61 GVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 125
            |:...:::|.||.|:.||:..||..|.:.:|..:..|..:|.::.|.|:::::||:|||.|.:::
  Fly    80 GLGDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRK 144

  Fly   126 LQQQQQSNSLSS------------------------SKNASG---------GGSGNSCSSSSANS 157
            .....:  :|:|                        |:..:|         .|||::...:||.:
  Fly   145 YTSDVE--TLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSGSAAPMASATT 207

  Fly   158 RSNSNNNGSSSNNNTQSSGGNNSNKSSQK----QGNSQSSQQGGG----SSGGNNSNNNSAAAAA 214
            .:.|.....:::.......|.:..:|::.    :|...:.....|    .:||..:.:.......
  Fly   208 ATGSPMRPYATSGGMPPLPGPSVMESARNAILARGQPLNFALPFGVAKPPAGGVPAASYIPRCKP 272

  Fly   215 SAAAAVAAAQSIKTHHS----SFLSAAAAAASGGTNQSAN-----NNSNNN-NQGNSTP---NSS 266
            .|.:.|..|.|:.|:.|    .:.:....|.||.:|..|.     .::|.| .|..|||   .::
  Fly   273 YATSYVDYAASLPTNESYLQMKYATLPPEAESGASNGLAELERVFGDANANFLQQRSTPVAGTAT 337

  Fly   267 SSGGGGGSQA 276
            :.|..|.:||
  Fly   338 AYGHDGLNQA 347

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
oc	NP_001356934.1	Homeodomain	68..123	CDD:459649	20/54 (37%)
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	9/25 (36%)
		Homeodomain	87..143	CDD:459649	20/55 (36%)