DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and prd

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster


Alignment Length:508 Identity:140/508 - (27%)
Similarity:201/508 - (39%) Gaps:143/508 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 RKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQ 129
            |||||.||||:.:|||.||..|.:|:||||:.|||:|.:.||.|:|:||||.||||:.|:|    
  Fly   211 RKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQ---- 271

  Fly   130 QQSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNN----TQSSGGNNSNKSSQKQGNS 190
                    ..:.|||..|.:.:|.|..:.|:|..:..||..:    ....|..:.....|:|.:.
  Fly   272 --------HTSVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQYDF 328

  Fly   191 QSSQQGGGSSGGNNSNNNSAAAAASAAAAVA-AAQSIKTHHSSFLSAAAAAAS---GGTNQSANN 251
            .          |:::|.:.:|||..|::.:: ...:...||..|.:.:|..||   .|.|     
  Fly   329 Y----------GSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYIMPGEN----- 378

  Fly   252 NSNNNNQGNSTPNSSSSGGGGGSQAGGHLSAAAAAAALNVTAAHQ----NSSP----------LL 302
                   ||:||..:.......:|.|......        |..||    |.||          |.
  Fly   379 -------GNTTPTGNIIVSSYETQLGSVYGTE--------TETHQTMPRNESPNESVSSAFGQLP 428

  Fly   303 PTPATSVSPVSIVCKKEHLSG-GYGSSVGGGGGG------GGASSGGLNLGVGVGVGVGVGVGVS 360
            ||| .|:|.|        :|| |..||.|...|.      ..||:|...|...:.|       .|
  Fly   429 PTP-NSLSAV--------VSGAGVTSSSGANSGADPSQSLANASAGSEELSAALKV-------ES 477

  Fly   361 QDLLRSPYDQLKDAGGDIGAGVHHHHSIYGSAAGSNPRLLQPGGNITPMDSSSSITTPSPPITPM 425
            .||:.:...||                 ||  ..|:.:.|:|...::|.||.:|.::.|..:...
  Fly   478 VDLIAASQSQL-----------------YG--GWSSMQALRPNAPLSPEDSLNSTSSTSQALDVT 523

  Fly   426 SPQSAAAAAHAAQSAQSAHHSAAHSAAYMSNHDSYNFWHNQYQQYPNNYAQAPSYY---SQMEYF 487
            :.|......|..|.|.......||     |:|...:..|.....:| .||.|..:|   |...:|
  Fly   524 AHQMFHPYQHTPQYASYPAPGHAH-----SHHGHPHAPHPHAHPHP-QYAGAHPHYPPPSSSAHF 582

  Fly   488 SNQNQVNYNMGHSGYTASNFGLSPSPSFTGTVSAQAFSQNSLDY--MSPQDKY 538
            ..||          :.|:.|   ||||             .::|  |.||..|
  Fly   583 MPQN----------FNAAAF---PSPS-------------KVNYTTMPPQPFY 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 33/54 (61%)
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649 33/55 (60%)
Blue background indicates that the domain is not in the aligned region.

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