DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment oc and Pph13

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster


Alignment Length:396 Identity:92/396 - (23%)
Similarity:143/396 - (36%) Gaps:95/396 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 125
            |...|||||.||||...||..||..|.:|.|||:|.|||:|::|:|.|:||||||:|||||.|:|
  Fly     4 GTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQ 68

  Fly   126 ----------------LQQQQQSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQS 174
                            |......:::....:::.||.|.....:...|       .:|.:|..::
  Fly    69 EKIGGLGGDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLPDTPPQS-------SNSLDNELKA 126

  Fly   175 SGGNNSNKSSQKQGN-------SQSSQQGGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTH--- 229
            |.|..:...|:...|       .....:.|||......:.......|.....:.:...::.|   
  Fly   127 SYGTGAMSPSRLSPNIFLNLNIDHLGLERGGSGLSMEWSTYPPQTQAQTHPQMDSDNQLQQHPPQ 191

  Fly   230 -HSSFLSAAAAAASGGTNQSANNNSNNNNQGNSTPNSSSSGGGGGSQAGGHLSAAAAAAALNVTA 293
             |:|....|.:::.....|..:....:|.|               ...|...:|:.:....:.::
  Fly   192 QHASDPIHAGSSSHHQQQQQQHQQEQHNPQ---------------LHPGLEFAASLSLDMTDGSS 241

  Fly   294 AHQNSSPL-LPTPATSVSPVSIVC------KKEHLSGGYGSSVGGGG----GGGGASSGGLNLGV 347
            |:.....| :.....::......|      .:....||:...||...    .|.|.||.|:..|.
  Fly   242 AYDEMKFLSVDVDQFTIDSFKADCILSMEQSQMQAYGGHSQLVGSSNELCLDGIGMSSFGMEEGE 306

  Fly   348 GVG-----------VGVGVGVGVSQDLLRSPYDQLKDAGGDIGAGVHHHHSIYGSAAGSNPRLLQ 401
            ...           ..:.:||....||:    :||            |||...|...|       
  Fly   307 PKSPPSLLVLDKSLPSLSIGVEGIADLV----EQL------------HHHQHEGGPVG------- 348

  Fly   402 PGGNIT 407
             ||.||
  Fly   349 -GGVIT 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 34/54 (63%)
Pph13NP_477330.1 Homeodomain 11..67 CDD:459649 34/55 (62%)

Return to query results.
Submit another query.