DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and Arx

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_001093644.1 Gene:Arx / 317268 RGDID:1562672 Length:566 Species:Rattus norvegicus


Alignment Length:462 Identity:106/462 - (22%)
Similarity:139/462 - (30%) Gaps:219/462 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AAGFLKSGDLGP------HPHSYGGPHPHHSVPHGPLPPGMPMPSLGPFGLPHGLEAVGFSQGMW 60
            ||...:.|:|.|      ||....|.....||          ..|.|             |....
  Rat   284 AAVATEGGELSPKEELLLHPEDAEGKDGEDSV----------CLSAG-------------SDSEE 325

  Fly    61 GVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 125
            |:..|||||.|||||..||:.||..|.||.|||:|.|||:|::::|.|:||||||:|||||.|::
  Rat   326 GLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKR 390

  Fly   126 LQQQQQSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNS 190
                                                                       :|.| :
  Rat   391 -----------------------------------------------------------EKAG-A 395

  Fly   191 QSSQQGGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNN 255
            |:...|....|        ..:|....:....|.....||.:..||..||               
  Rat   396 QTHPPGLPFPG--------PLSATHPLSPYLDASPFPPHHPALDSAWTAA--------------- 437

  Fly   256 NNQGNSTPNSSSSGGGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTPATSVS-PVSIVCKKE 319
                                      |||||||.          |.||.|..|.| |.|      
  Rat   438 --------------------------AAAAAAAF----------PSLPPPPGSASLPPS------ 460

  Fly   320 HLSGGYGSSVGGGGGGGGASSGGLNLGVGVGVGVGVGVGVSQDLLRSPYDQLKDAGGDIGAGVHH 384
                                              |..:|:|..|               ||.|..
  Rat   461 ----------------------------------GAPLGLSTFL---------------GAAVFR 476

  Fly   385 HHSIYGSAAGSNPRLLQPGGNITPMDSSSS----ITTPSPPITPMSPQSAAAAAHAAQSAQSAHH 445
            |.:....|.|   ||.   ..:.|:.|:|:    :..|:|.:     :.|.|:...|..|.:|..
  Rat   477 HPAFISPAFG---RLF---STMAPLTSASTAAALLRQPTPAV-----EGAVASGALADPATAAAD 530

  Fly   446 SAAHSAA 452
            ..|.|.|
  Rat   531 RRASSIA 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 35/54 (65%)
ArxNP_001093644.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..79
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..264
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..319 8/42 (19%)
Homeodomain 333..389 CDD:459649 35/55 (64%)
OAR 530..548 CDD:461067 3/8 (38%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 534..547 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.

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