DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment oc and gsc

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_571092.1 Gene:gsc / 30212 ZFINID:ZDB-GENE-980528-2060 Length:240 Species:Danio rerio


Alignment Length:180 Identity:59/180 - (32%)
Similarity:91/180 - (50%) Gaps:29/180 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SGDLGPHPHSYGGPHPHHSVPHGPLPPGMPMPSLG-------PFG-----------LPHGLEA-- 52
            :|.:|.:.:.||  ..|...|.||...| .:|:||       |.|           :||.:.:  
Zfish    64 NGRIGYNNYYYG--QLHVQGPTGPACCG-AIPTLGSQQCPCIPTGYDSAGSVLISPVPHQMMSYM 125

  Fly    53 -VGF-----SQGMWGVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRV 111
             ||.     .|.:..::.|::||.||.||..||:.||.||.:|:|||:..||::|.|::|.|.:|
Zfish   126 NVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKV 190

  Fly   112 QVWFKNRRAKCRQQLQQQQQSNSLSSSKNASGGGSGNSCSSSSANSRSNS 161
            :|||||||||.|:|.:...:.:..|...|.|...:........::..|:|
Zfish   191 EVWFKNRRAKWRRQKRSSSEESENSQKWNKSTKTTSEKIEEGKSDVDSDS 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 32/54 (59%)
gscNP_571092.1 Homeodomain 147..203 CDD:459649 32/55 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 199..240 8/40 (20%)

Return to query results.
Submit another query.