DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and Alx1

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_037053.1 Gene:Alx1 / 25401 RGDID:2273 Length:326 Species:Rattus norvegicus


Alignment Length:145 Identity:57/145 - (39%)
Similarity:81/145 - (55%) Gaps:36/145 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 VNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ-- 124
            |::.|:||.|||||..||:.||.:|.||.|||:::||::||:..|.|:||||||:|||||.|:  
  Rat   127 VSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 191

  Fly   125 ---QLQQ--------------------QQQSNSLSSSKNASGGGSGNSC-----SSS-----SAN 156
               |:||                    .|..|:|.:. |.|||....||     :||     |.:
  Rat   192 RYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAG-NTSGGSVVTSCMLPRDASSCMTPYSHS 255

  Fly   157 SRSNSNNNGSSSNNN 171
            .|::|:..|.|::.|
  Rat   256 PRTDSSYTGFSNHQN 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 34/54 (63%)
Alx1NP_037053.1 Homeodomain 133..189 CDD:459649 34/55 (62%)
Transactivation domain. /evidence=ECO:0000269|PubMed:12390248 192..326 20/80 (25%)
OAR 302..320 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Blue background indicates that the domain is not in the aligned region.

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