DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and vab-3

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_001024570.1 Gene:vab-3 / 181251 WormBaseID:WBGene00006870 Length:455 Species:Caenorhabditis elegans


Alignment Length:249 Identity:68/249 - (27%)
Similarity:107/249 - (42%) Gaps:39/249 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 RKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQ 129
            ||.:|.||:||:.|::.||..|.:|.|||:|.||.:|.||.|||:|:||||.|||||.|::.:.:
 Worm   215 RKLQRNRTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEKMR 279

  Fly   130 QQSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQ 194
            .:.:|.:...:.|.|....:..|.:.::.:|...:.:|:.|...|   |||..........|:||
 Worm   280 NKRSSGTMDSSLSNGTPTPTPGSVTGSNMTNPIGSPASTPNRFPS---NNSANLPTTNFVPQTSQ 341

  Fly   195 QGGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNNNNQG 259
            ...|.|.......:...|...:.|........:.||..                         ||
 Worm   342 MYAGLSQPAMDPYSFGIANGFSMAPYPQVTDFQPHHMF-------------------------QG 381

  Fly   260 NST-----PNSSSSGGG------GGSQAGGHLSAAAAAAALNVTAAHQNSSPLL 302
            .|.     |...::|.|      ..:.|.|.:...::..:|.|:|...:..|.|
 Worm   382 RSPYDFPYPRMPTNGHGFQQSMSPATTAVGDIPTLSSGMSLPVSAVLNSIDPSL 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 32/54 (59%)
vab-3NP_001024570.1 PAX 5..129 CDD:128645
Homeodomain 219..274 CDD:459649 32/54 (59%)
Blue background indicates that the domain is not in the aligned region.

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