DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment oc and ceh-45

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_490823.1 Gene:ceh-45 / 171689 WormBaseID:WBGene00022837 Length:229 Species:Caenorhabditis elegans


Alignment Length:179 Identity:58/179 - (32%)
Similarity:87/179 - (48%) Gaps:32/179 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 HPHSYGGPHPHHSVPHGPLPPGMPMPSLGPFGLPHGLEAVGFSQGMWGVNTRKQRRERTTFTRAQ 78
            ||.:|    |..|:..|||.|    |.:.|:...|             ..:|::||.||.|:..|
 Worm    77 HPANY----PFFSMLCGPLMP----PFMAPYHHQH-------------YASRRKRRHRTIFSEEQ 120

  Fly    79 LDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQQSNSLSSSKNASG 143
            |::||..|..|.|||...|||:|::.:|.|.||:|||||||||.|:|.:        ..|:.:..
 Worm   121 LNILETTFSTTHYPDATTREELAVQCSLKEERVEVWFKNRRAKERKQKK--------DDSRTSKH 177

  Fly   144 GGSGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQS 192
            .|..:.|..|..::|........:|:....||   ..:|:|.|..:|::
 Worm   178 SGDDSECDESDEDTRKVKRIKRENSSGKETSS---PESKASLKTSHSEN 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 31/54 (57%)
ceh-45NP_490823.1 Homeodomain 110..166 CDD:459649 31/55 (56%)

Return to query results.
Submit another query.