DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment oc and CRX

DIOPT Version :9

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_000545.1 Gene:CRX / 1406 HGNCID:2383 Length:299 Species:Homo sapiens


Alignment Length:376 Identity:116/376 - (30%)
Similarity:149/376 - (39%) Gaps:120/376 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SYGGPHPHHSVP----HGP----LPPGMPMPSLGPFGLPHGLEAVGFSQGMWGVNTRKQRRERTT 73
            :|..|.||:||.    .||    :...:|.||.                      .|||||||||
Human     3 AYMNPGPHYSVNALALSGPSVDLMHQAVPYPSA----------------------PRKQRRERTT 45

  Fly    74 FTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQQSNSLSSS 138
            |||:||:.|||||.||:|||::.|||||||||||||||||||||||||||||.|||:|      .
Human    46 FTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQ------Q 104

  Fly   139 KNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQ---SSGGNNSNKSSQKQGNSQSSQQGGGSS 200
            :...||         .|.:|......|:|...:|.   ...|.:.:.|....|.|.|......:.
Human   105 QQPPGG---------QAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATV 160

  Fly   201 GGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNNNNQGNSTPNS 265
            ...:..:.|....|..|..||:..|:.:...:...|.|:|..                  |:|::
Human   161 SIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFC------------------SSPSA 207

  Fly   266 SSSGGGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPT---PATSVSPVSIVCKKEHLSGGYGS 327
            ..|.....|....:|                  ||::|.   ||  :||:|            |.
Human   208 YGSPSSYFSGLDPYL------------------SPMVPQLGGPA--LSPLS------------GP 240

  Fly   328 SVGGGGGGGGASSGGLNLGVGVGVGVGVGVGVSQDLLRSPYDQL--KDAGG 376
            |||........|..|.:.|.                 .||.|.|  ||..|
Human   241 SVGPSLAQSPTSLSGQSYGA-----------------YSPVDSLEFKDPTG 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeobox 71..123 CDD:333795 43/51 (84%)
CRXNP_000545.1 Homeobox 43..93 CDD:395001 41/49 (84%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..155 21/76 (28%)
TF_Otx 166..249 CDD:397546 26/132 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2251
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - otm41031
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X850
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
76.770

Return to query results.
Submit another query.