DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and Crx

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_001106801.1 Gene:Crx / 12951 MGIID:1194883 Length:323 Species:Mus musculus


Alignment Length:230 Identity:91/230 - (39%)
Similarity:121/230 - (52%) Gaps:27/230 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SYGGPHPHHSVPHGPLPPGMPMPSLGP-FGLPHGLEAVGFSQGMWGVNTRKQRRERTTFTRAQLD 80
            :|..|.||:||        ..:...|| ..|.|  :||.:|..     .||||||||||||:||:
Mouse    27 AYMNPGPHYSV--------NALALSGPNVDLMH--QAVPYSSA-----PRKQRRERTTFTRSQLE 76

  Fly    81 VLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQQ-------SNSLSSS 138
            .|||||.||:|||::.|||||||||||||||||||||||||||||.|||:|       ......:
Mouse    77 ELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGAQTKARPA 141

  Fly   139 KNASGGG---SGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQQGGGSS 200
            |..:|..   |.:.|:.....|.|.|.:....|.:.| ::....|..|...:.....:|:.|..:
Mouse   142 KRKAGTSPRPSTDVCTDPLGISDSYSPSLPGPSGSPT-TAVATVSIWSPASEAPLPEAQRAGLVA 205

  Fly   201 GGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLS 235
            .|.:..:...|...:.|:|..::.|.....||:.|
Mouse   206 SGPSLTSAPYAMTYAPASAFCSSPSAYASPSSYFS 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 46/54 (85%)
CrxNP_001106801.1 Homeodomain 64..117 CDD:459649 44/52 (85%)
TF_Otx 188..273 CDD:427350 11/53 (21%)

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