DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and Phox2a

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_446321.2 Gene:Phox2a / 116648 RGDID:621323 Length:281 Species:Rattus norvegicus


Alignment Length:378 Identity:96/378 - (25%)
Similarity:121/378 - (32%) Gaps:169/378 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 HGPLPP-----GMPMPSLGP-----------------------FGLPHGLEAVGFSQGMWGVNTR 65
            :.||.|     |.|.|:||.                       |..|.||.           ..|
  Rat    35 YSPLRPAFPAAGPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLH-----------EKR 88

  Fly    66 KQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQ 130
            ||||.|||||.|||..||.:|.:|.||||:.|||:||||:|.|:||||||:|||||.|:|     
  Rat    89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ----- 148

  Fly   131 QSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQQ 195
                                                                             
  Rat   149 ----------------------------------------------------------------- 148

  Fly   196 GGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNNNNQGN 260
                         ..||:|..||                 .|..|..|....|:.::.:..:..:
  Rat   149 -------------ERAASAKGAA-----------------GATGAKKGEARCSSEDDDSKESTCS 183

  Fly   261 STPNSSSSGGGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTPATSVSPVSIVCKK----EHL 321
            .||:|::|           |.....|             |.|.:|..|.||:......    :.|
  Rat   184 PTPDSTAS-----------LPPPPPA-------------PSLASPRLSPSPLPAALGSGPGPQPL 224

  Fly   322 SGGYGSSVGGGGGGG-GASSGG-LNLGVGVGVGVGVGVGVSQDLLRSPYDQLK 372
            .|...:.|.|||||| ||.:.. |........|.|...||.....|.|...||
  Rat   225 KGALWAGVAGGGGGGPGAGAAELLKAWQPAEPGPGPFSGVLSSFHRKPGPALK 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 38/54 (70%)
Phox2aNP_446321.2 Homeodomain 91..147 CDD:459649 38/55 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..219 23/197 (12%)

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