DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and Vsx1

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_473409.1 Gene:Vsx1 / 114889 MGIID:1890816 Length:363 Species:Mus musculus


Alignment Length:179 Identity:60/179 - (33%)
Similarity:74/179 - (41%) Gaps:65/179 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SGD------LGPHPHSYGGPHPHHSVP-HGPLPPGMP---------------------------- 37
            |||      .||.|    ||....|.| .|.||.|:.                            
Mouse    55 SGDPAEAIGSGPGP----GPGLCGSCPARGALPLGLGLLCGFGAQPPSAAAAARARCLLLADLRL 115

  Fly    38 MPSLGP-----FGLPHGLEAVGFSQGMWGVNT---------------------RKQRRERTTFTR 76
            :||.||     .|..|...|:|..|....|:|                     ||:||.||.||.
Mouse   116 LPSAGPEPAVAQGPVHPPPALGSQQRSESVSTSDGDSPSEEKNDPKMSLILGKRKKRRHRTVFTA 180

  Fly    77 AQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 125
            .||:.||..||:..|||::.||.:|.|..|||.|:||||:|||||.|::
Mouse   181 HQLEELEKAFGEAHYPDVYAREMLAAKTELPEDRIQVWFQNRRAKWRKR 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 32/54 (59%)
Vsx1NP_473409.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Octapeptide motif 31..38
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..66 3/10 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..166 7/43 (16%)
Nuclear localization signal. /evidence=ECO:0000255 168..173 2/4 (50%)
Homeodomain 172..228 CDD:459649 32/55 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 300..363
Blue background indicates that the domain is not in the aligned region.

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