Protein Alignment oc and Pax3

DIOPT Version :10

• Sequence 1: NP_001356934.1
• Gene: oc / 31802
• FlyBaseID: FBgn0004102
• Length: 664
• Species: Drosophila melanogaster
• Sequence 2: NP_446162.1
• Gene: Pax3 / 114502
• RGDID: 620431
• Length: 484
• Species: Rattus norvegicus
• Alignment Length: 301
• Identity: 79/301 - (26%)
• Similarity: 114/301 - (37%)
• Gaps: 80/301 - (26%)

  Fly    65 RKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQ 129
            |||||.|||||..||:.||..|.:|.||||:.|||:|.:..|.|:||||||.||||:.|    :|
  Rat   217 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR----KQ 277

  Fly   130 QQSNSLSSSKNASGGGSGNSC-------SSSSANSRSNSNNNGSSSNNNT-------------QS 174
            ..:|.|.:..:...||...:.       ..|..:.:..|.....|..::|             ||
  Rat   278 AGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQS 342

  Fly   175 SGGNNSNKS------SQKQGNSQSSQQGGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSF 233
            :..:|::.|      |.:.|.|..:......||.:|..|.:.....|     .....:.|:|
  Rat   343 TIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPAIGNGLS-----PQVMGLLTNH--- 399

  Fly   234 LSAAAAAASGGTNQSANNNSNNNNQGNSTPNSSSSGGGGGSQAGGHLSAAAAAAALNVTAAHQNS 298
                     ||                 .|:...:........||.......:|:.:....|..:
  Rat   400 ---------GG-----------------VPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKN 438

  Fly   299 SPLLPT-----PAT------SVSPVSIVCKKEHLSGGYGSS 328
            ...|||     |.|      |:.||:     .:..|.||.|
  Rat   439 VDSLPTSQPYCPPTYSTTGYSMDPVT-----GYQYGQYGQS 474

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
oc	NP_001356934.1	Homeodomain	68..123	CDD:459649	33/54 (61%)
Pax3	NP_446162.1	PAX	34..159	CDD:128645
		Homeodomain	220..276	CDD:459649	34/59 (58%)
		Pax7	347..391	CDD:403540	10/48 (21%)