DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and Prrx2

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_001402085.1 Gene:Prrx2 / 113931 RGDID:1311471 Length:248 Species:Rattus norvegicus


Alignment Length:154 Identity:56/154 - (36%)
Similarity:72/154 - (46%) Gaps:28/154 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PHPHSYGGPHPHHSVPH---------------GPLPPGMPMPSLG----PFGLPHGLEAV----- 53
            |.|........:.||.|               ||:|.  |....|    |.|...|.||.     
  Rat    21 PAPGDCAQARKNFSVSHLLDLEEVAAAGRRAAGPVPG--PEAREGAAREPSGGSSGSEAAPQDGD 83

  Fly    54 --GFSQGMWGVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFK 116
              ....|......:||||.||||..:||..||.:|.:|.|||.|:|||:|.::||.|:||||||:
  Rat    84 CPSPGHGSATKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQ 148

  Fly   117 NRRAKCRQQLQQQQQSNSLSSSKN 140
            |||||.|:..:....:.|.|..|:
  Rat   149 NRRAKFRRNERAMLATRSASLLKS 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 34/54 (63%)
Prrx2NP_001402085.1 Homeodomain 104..156 CDD:459649 31/51 (61%)
COG5576 <110..214 CDD:227863 32/63 (51%)
OAR 222..238 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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