DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and sebox

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:XP_004911692.2 Gene:sebox / 100497846 XenbaseID:XB-GENE-853158 Length:275 Species:Xenopus tropicalis


Alignment Length:145 Identity:49/145 - (33%)
Similarity:69/145 - (47%) Gaps:34/145 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VPHGPLPPGMPMPSLGPFGLPHGLEAVGFSQGMWGVNTRKQRRERTTFTRAQLDVLEALFGKTRY 91
            |||...|..  :|:.|....|.|       .|:.|..:.:::|:||.:::.|...||::|....|
 Frog    19 VPHWMNPQN--VPAAGILAKPEG-------AGLNGSPSGQRKRKRTLYSKWQQLELESVFAIVPY 74

  Fly    92 PDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQQSNSLSSSKNASG--------GGSGN 148
            |||..||::|..|.||||:|||||:||||:                 ||.||        .||..
 Frog    75 PDISTREQLAKIIRLPESKVQVWFQNRRAR-----------------KNKSGKLDRSLYRRGSSV 122

  Fly   149 SCSSSSANSRSNSNN 163
            ..|..|.:|:|...|
 Frog   123 RLSHLSLHSQSPPQN 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 28/54 (52%)
seboxXP_004911692.2 Homeodomain 51..104 CDD:459649 27/52 (52%)

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