DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and vsx2

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:XP_004917101.1 Gene:vsx2 / 100493176 XenbaseID:XB-GENE-853775 Length:377 Species:Xenopus tropicalis


Alignment Length:68 Identity:33/68 - (48%)
Similarity:45/68 - (66%) Gaps:0/68 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 GMWGVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 122
            |::..|....|..||.||..||:.||..|.:..|||::.||.:|:|..|||.|:||||:|||||.
 Frog   137 GVFTGNKGAIRSFRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKW 201

  Fly   123 RQQ 125
            |::
 Frog   202 RKR 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 30/54 (56%)
vsx2XP_004917101.1 Homeodomain 147..203 CDD:459649 30/55 (55%)
OAR 318..336 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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