DRSC/TRiP Functional Genomics Resources

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Protein Alignment oc and sia3

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:XP_002942209.2 Gene:sia3 / 100490453 XenbaseID:XB-GENE-480406 Length:247 Species:Xenopus tropicalis


Alignment Length:91 Identity:31/91 - (34%)
Similarity:48/91 - (52%) Gaps:1/91 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 RERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQQQSN 133
            |:||.:|:.|.|.|:..|....|||...|..:|....:||.|:||||:||||:...::.:.|:. 
 Frog   139 RKRTIYTKEQTDFLQNQFDINPYPDFVSRCHIAQLTGVPEPRIQVWFQNRRARHLSKIHRSQEP- 202

  Fly   134 SLSSSKNASGGGSGNSCSSSSANSRS 159
            ::..:...:|.....|....|.|.||
 Frog   203 TIQEASTLTGTQKLISHVHQSTNPRS 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 24/53 (45%)
sia3XP_002942209.2 COG5576 <123..236 CDD:227863 31/91 (34%)
Homeodomain 139..192 CDD:459649 24/52 (46%)

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