DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment oc and arx

DIOPT Version :10

Sequence 1:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster
Sequence 2:XP_002933659.1 Gene:arx / 100486727 XenbaseID:XB-GENE-483940 Length:536 Species:Xenopus tropicalis


Alignment Length:421 Identity:96/421 - (22%)
Similarity:129/421 - (30%) Gaps:206/421 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 GLEAVGFSQGM---WGVNTRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESR 110
            |.::|..|.|.   .|:..|||||.|||||..||:.||..|.||.|||:|.|||:|::::|.|:|
 Frog   280 GEDSVCLSAGSDSEEGMLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEAR 344

  Fly   111 VQVWFKNRRAKCRQQLQQQQQSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQSS 175
            |||||:|||||.|::                                                  
 Frog   345 VQVWFQNRRAKWRKR-------------------------------------------------- 359

  Fly   176 GGNNSNKSSQKQGNSQSSQQGGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAA 240
                     :|.| :|:...|....|        ..:|:........|.....||.:..||..||
 Frog   360 ---------EKAG-AQTHAPGLPFPG--------PLSASHPLGPYLDASPFPPHHPALDSAWTAA 406

  Fly   241 ASGGTNQSANNNSNNNNQGNSTPNSSSSGGGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTP 305
                                                     |||||||.          |.||.|
 Frog   407 -----------------------------------------AAAAAAAF----------PSLPPP 420

  Fly   306 ATSVSPVSIVCKKEHLSGGYGSSVGGGGGGGGASSGGLNLGVGVGVGVGVGVGVSQDLLRSPYDQ 370
                         .|             |.......|..||:..                     
 Frog   421 -------------PH-------------GSAALPPSGSPLGLST--------------------- 438

  Fly   371 LKDAGGDIGAGVHHHHSIYGSAAGSNPRLLQPGGNITPMDSSSS----ITTPSP----------- 420
                  .:||.|..|.:....|.|   ||.   ..:.|:.|:|:    :..|||           
 Frog   439 ------FLGAAVFRHPAFISPAFG---RLF---STMAPLTSASTAAALLRQPSPAVESSVQSSGL 491

  Fly   421 --PITPMSPQSAAAAA--------HAAQSAQ 441
              |:|..:.:.|::.|        ||||..|
 Frog   492 SDPVTAAADRRASSIAALRLKAKEHAAQLTQ 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 35/54 (65%)
arxXP_002933659.1 Homeodomain 302..358 CDD:459649 35/55 (64%)
OAR 500..518 CDD:461067 3/17 (18%)

Return to query results.
Submit another query.