DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Caf1-180 and AT4G20160

DIOPT Version :9

Sequence 1:NP_572495.1 Gene:Caf1-180 / 31801 FlyBaseID:FBgn0030054 Length:1183 Species:Drosophila melanogaster
Sequence 2:NP_001328820.1 Gene:AT4G20160 / 827762 AraportID:AT4G20160 Length:1213 Species:Arabidopsis thaliana


Alignment Length:1246 Identity:246/1246 - (19%)
Similarity:438/1246 - (35%) Gaps:371/1246 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 AVPAKSAEKTASGGKKFVQTRLPFKLLTPGGGAVPTSSSSSSSPATIGSGPVTVILDEDDPAPRK 82
            |||..|:.|::....:..:|.       .....||:||||..|.:...||               
plant    84 AVPECSSNKSSVSDHRLSKTE-------ESRQDVPSSSSSLGSDSDPNSG--------------- 126

  Fly    83 RKLSYDDESPSEGTGCSTGQL--RRST-----SKENL--DLASSIATKKVKTTDS--------VV 130
                 ..|:||.....|..|:  .|:|     |.::|  ...||:.:..::.::|        ::
plant   127 -----QPENPSRNAASSLVQIWEARTTQQPPSSNQSLIDSRTSSMGSNALENSESLESVKESQMI 186

  Fly   131 EDVIELDEDEADKEIE-----------DQD----------------------------------Q 150
            :.:.|.:.:|.::|||           |::                                  |
plant   187 QPIEECNNEEEEEEIECAPPPLESGEKDREGVRVMDIIRKLSNDSETITNNDNGSSGNDNSKEVQ 251

  Fly   151 LVEAKSSKEVKLKPKKSEGKKGSPAPIQIKLPLVNKRSKRRKSLKKSEEPLETSTADVAKGDSES 215
            ..||:|..:|...|:    .:|..|...:.:.:...|.|....|::.    ...:....:|..:|
plant   252 TTEARSFPQVACSPR----IRGRQALADLLVQMTRDREKDLACLRER----HCVSKFTNRGRIQS 308

  Fly   216 SDDIEIIAEELNPQKRQKVQTPREKSPENSSTSGKHTEEVMQKNGKDSKKQEESMKAVKESK--- 277
            :..|......|..|.|.:.::....|..|.|:.|.....::::..|.:.:..|:..:...:.   
plant   309 TLRIRCYERCLAIQGRHRSKSTSAGSDSNRSSRGSGVMHLLREKYKANSENIETGASTSHASTRG 373

  Fly   278 ----KEEPKTAEQNKKNDQATIDLFMGKKMETNKKDKPEVK--TTAKDNKKDPLIAEDSKPK--- 333
                |:..|..|  ||..|.||:          |....|:|  .:|.:|.|..:::|.|:.:   
plant   374 RIMDKDPHKATE--KKVLQETIE----------KSGVKEIKEVVSAVENAKKGVLSEISENRNGL 426

  Fly   334 -----EVPKKETSKTGGKGKKEGAKPAEKSK-----KEEKEDSTTKSKKEKADSPANNQKEQQIG 388
                 |..:|||.:  |||:|...|....||     |.||.:||    ||||.:..:..::..:|
plant   427 KKLAGETIQKETVE--GKGEKRETKEKVISKESLEGKGEKREST----KEKAIAKESVAEKALVG 485

  Fly   389 VKKKTSEPEDASNSHKSVTAKK--DSKKDEAST---QVKSDNESPEAAEISMILSTSEANSSSSE 448
            :.:|.    :..||.:.:..:|  :..|.|.:|   :|:.::...||....:.:.::|.:|:::.
plant   486 IAEKV----NLWNSDEKMNRRKVVEKGKTEGNTNTERVERNDVLEEATRRILSVESAERSSTTTS 546

  Fly   449 HEMDADTDTAATDRPSAQKE--TRLNRKSLPEVTGA---PKGLTPKQQRLMEQRKKAREEKEQKL 508
            .|.....:.|.......:||  ..|......||...   |:|:|.:....:  ||.|.||   |:
plant   547 KETMTRCEVAEKVVKGKKKEDFVSLESNKSKEVEDGNIKPQGVTTQADSCL--RKPAIEE---KV 606

  Fly   509 AEERRLKQQDKEHREQQKKQERDEKEQQRKLERDQKEQQRKMEKEEKERKRQAEVDSKNEEKRK- 572
            .:|..:|...|:..|::.::||.|.|::........|:......:||:.:|:|....|.:.:.| 
plant   607 LQETTVKSDLKKPTEKESREERREIEEEESTSMGIAEKVNLWNSKEKKNRRKAMEKGKGKTEGKA 671

  Fly   573 ---RNEAKEEVQRK----KDEERR------------------------------------KKEQE 594
               .||..:|..|:    :..||.                                    |||::
plant   672 ITETNELLQEASRRISNVETAERSIDTSWITVVKVVGDRVIMDKRKSSGETTRSAEIGGGKKEED 736

  Fly   595 REEAEQKKKRAAESFSKFFVPKQPKCGSGSNNTSYLEHEQSSCDSSKASSQTLAFRPFQIKDDML 659
            ....|.|.|...|  .|...|:....||        :......:||:...:||:.|..:.|.   
plant   737 LASVEAKSKDVIE--DKNMNPQAVIHGS--------KERDKERNSSQNGEETLSLRNSEAKS--- 788

  Fly   660 LAPIVRNSLGQEQRSQLDGLFRHRDEEAD------------DEEEEEEQDIVRRKPPNRANLYLS 712
            ...|.|..:.||::|...| .|.:|:|.:            :.|.:..::|.|.|.        .
plant   789 TKEIERQEVTQEEKSVSHG-SREKDKERNSLQYGEKMCFLRNSEAKSTKEIERNKS--------Q 844

  Fly   713 ELSSGRRKPLKMQRDVKLQRRTKDEEDDDDVQVIDYLSPAGLPIEVEQPKQLTRMKAKYLHFADN 777
            |:|.|........|:...::.:..::|:.                                    
plant   845 EVSQGEESASHGSRESAKEKNSSQQDDET------------------------------------ 873

  Fly   778 RRPPYYGTWRKKSSSISARRPLAQDKVLFDYEVDSDCEWEEEEPGESLSAS-----EDEKEKESE 837
                  .|.|..:.....:.|          |.:...:.|.||.||::..:     .|....|.|
plant   874 ------STHRNPNDKKGIKEP----------EDEESKKVEREETGENVEEASVEFVNDWDGNEME 922

  Fly   838 EESEEEYNEWYVPHGHLSDEELQNDGDGMED-----GHTREAQKAK-LQVLQQEFAQEMKKQTKK 896
            ||.||||.:::           ..|.|.:.|     .:..:.:|.: |:||..|  .|.|.....
plant   923 EEEEEEYGDYF-----------NGDDDWIHDISRPRSYWEDLRKERYLEVLNTE--SEKKDICNL 974

  Fly   897 IKARLLGPVWLDENGNKSELFPAIFAHTIDMYACWQVE-----PLS-------------LEPPPE 943
            |:.|.:           |....:.....||.....:|:     ||:             :|....
plant   975 IERRTV-----------SNFLTSDLRQKIDNLMITRVQSHIGVPLNQIEEGDEYEEEWEVECSAR 1028

  Fly   944 PERQDQTPEQPVPLQLD---DRLMQQLVR----LTHGNRNSKTFLINEYLEYLK-TQATAEANQT 1000
            .|..::|.|:|....|:   |...|...|    ::...|:......||....|. .:.....||:
plant  1029 NEEDNETEEEPEKTNLEAPSDVCSQSSARSSTMMSWNFRDQDIDKDNEPTTSLSLPEPLVPTNQS 1093

  Fly  1001 TLPSKAV--LREKFDELASWKTVEL----------------STPEAAAASANSAKKGRKPK---- 1043
            |...:.:  |:|:.::|.. :.:||                |..:..:.|.:||::...||    
plant  1094 TQDMQTISDLKEQMEQLQR-EMLELRNTVKSCIDMQLHFQKSVTQDLSRSGSSAEQRVDPKKDPL 1157

  Fly  1044 KRLCWVVASDM 1054
            ||.| .|.|:|
plant  1158 KRKC-CVCSEM 1167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Caf1-180NP_572495.1 GBP_C <491..599 CDD:303769 30/151 (20%)
coiled coil 573..584 CDD:293879 4/14 (29%)
CAF1A 770..>814 CDD:289057 4/43 (9%)
CAF1-p150_C2 947..>1127 CDD:292176 31/138 (22%)
AT4G20160NP_001328820.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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